Runella slithyformis: Runsl_4806
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Entry
Runsl_4806 CDS
T01553
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
rsi
Runella slithyformis
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsi03016
]
Runsl_4806
Enzymes [BR:
rsi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
Runsl_4806
Transfer RNA biogenesis [BR:
rsi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Runsl_4806
Prokaryotic type
Runsl_4806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
AEI51119
UniProt:
A0A7U4E8C6
LinkDB
All DBs
Position
complement(5549850..5550599)
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AA seq
249 aa
AA seq
DB search
MRYFIEVSYKGTHYHGWQRQPNGITVQEELERALGILLRAPVEIIGSSRTDAGVHAEQQF
AHFDSEIPIASPERVTLGLNSLLPKDIAVPQIIPVRADVHSRFAATHRCYEYRIIFQKNS
FLSELAHIFRPELDIQKMNEAAGLLLQYTDFECFSKIHTDVKTFLCTIEHAYWQKTRNGL
TFYIKANRFLRGMVRAIVGTLLEVGQGKKTYADFEQLIMSKNRKNAAAQAPACGLFLVEV
GYEWESIVL
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgcgttattttattgaagtaagttataaaggaacccattatcacggttggcagcgtcag
cccaacggcattaccgttcaggaagaattggaacgggcgctggggattcttctgcgggct
cctgtagagatcatcggaagcagtcggactgatgcgggggtgcatgccgagcagcaattt
gcccattttgacagtgaaataccgatcgcttcgcctgaacgggtaacgttggggctgaac
agtctgctgcccaaagatattgccgttccgcaaatcattcccgtccgggccgacgtgcat
tcacgctttgccgctacgcatcgttgctatgagtaccgtattatttttcagaaaaattcc
tttctttcggagctggcccatatctttcggccggagttggatattcaaaaaatgaacgaa
gcggccggcctgctgcttcaatacactgattttgaatgtttcagtaaaattcacaccgac
gtcaaaacctttttatgtaccattgagcacgcttattggcagaaaacacggaacggactg
acgttttacatcaaagccaatcgctttctgcgcggcatggtgcgggccattgtgggtaca
ttgctggaagtgggacagggaaaaaagacctatgcggattttgaacagctgatcatgtcg
aaaaaccgtaagaatgccgctgcccaggcacccgcctgcgggctgtttctggtagaggtc
ggttatgaatgggagagtattgtgctatag
DBGET
integrated database retrieval system
