Richelia sinica: B6N60_05138
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Entry
B6N60_05138 CDS
T07308
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rsin
Richelia sinica
Pathway
rsin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B6N60_05138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsin03019
]
B6N60_05138
03009 Ribosome biogenesis [BR:
rsin03009
]
B6N60_05138
Enzymes [BR:
rsin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B6N60_05138
Messenger RNA biogenesis [BR:
rsin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B6N60_05138
Ribosome biogenesis [BR:
rsin03009
]
Prokaryotic type
rRNA processing factors
B6N60_05138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
TFIIE-A_C
Motif
Other DBs
NCBI-ProteinID:
QXE26406
UniProt:
A0A975TCQ6
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All DBs
Position
complement(5546994..5549105)
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AA seq
703 aa
AA seq
DB search
MPKQIIIAEQHQIAAVFSEDQIQELVVATGHHQIGDIYLGVVENVLPGIDAAFVNIGDPE
RNGFIHVTDLGPLRLRRSSAAITELLTPQQKVLVQVMKEPTGTKGPRLTGNITLPGRYVV
LMPYGRGVNLSRRIKSESERNRLRALAILIKPAGMGLLVRTEAEGKPEEAIIEDLEVLQR
QWEAIQQEAVSTRAPALLNRDDDFIQRVLRDMYGADVNRIVVDSSTGLKRVKQYLQNWSG
GQTPQGLLIDHHRDRSPILEYFRINAAIREALRPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQLRLRNIAGVIVVDFIDMESRRDQLQVLEHFNKAL
KADKARPQIAQLTELGLVELTRKRQGQNIYELFGETCSTCGGLGHTVRLPGETENRMPIP
ATDIPERFVVPQPQREREPREAREAREPRILNTRLPEPRETYEGFGEVFENDTGFNAMHL
INHPSYQELGDSSKRRTRTRRSRIGINGVNGKDEPRLGGNSLGFINEQDLDLDNDVDLPP
PELPSPGLGKSGWTERPERTKVKLDPIKSVVEPPEIVSVEMTNQEQDQYAEMGVSPLLKL
DREVKNTRNLIINIIQPGQAPSAFTEPTPEVTTPEKVISDLRPVKIQTQTIEPQESLFPA
TVAPESLSPVGDETEANTATMINRRRRRRSSAVESDTSQPEDF
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacaaattatcatcgcggagcagcatcaaatcgctgctgtattttcggaagat
caaatacaagaacttgttgttgctacaggtcatcaccaaattggtgatatctatttggga
gtagtcgaaaacgtattgcctgggatagacgctgcttttgtgaatattggcgacccagaa
cgtaatggttttattcatgtgactgatttaggccccctgcgattaagacgcagttctgcc
gccattacagaacttttgactccccagcaaaaagttttggtacaggtgatgaaggagcca
acgggaaccaaaggcccaaggctcactggtaacattactttacctggacgctatgttgta
ttaatgccctatggtcggggtgtaaatttatcacgacggattaaaagtgaaagtgagcgt
aaccgactacgggccttagcgattttgattaaaccagcgggtatgggcttactagtccgc
accgaagcagaaggaaaacccgaagaagcaattattgaagatttggaagtgctgcaacgg
caatgggaagccattcagcaagaagcagtctccacccgcgcaccagctttactcaaccga
gatgatgattttatccagcgtgtcttaagagatatgtatggtgctgatgtcaatcggatt
gtggttgattccagtaccggcttgaagcgggtaaaacagtatttacaaaactggagtggt
ggtcaaacaccacagggattactgattgatcaccatcgcgatcgctcccccattttagaa
tacttccgcatcaacgcggcaattagggaagctctccgacccagagtagacctaccttct
gggggttatatcattatcgagccaacggaagcattaacggtaattgacgtaaactccggt
tcctttacgcgatcggcaaccgcgagagaaaccgtgctgtggacaaactgtgaagctgcc
acagaaattgctcgccagttacgtttgcgaaacattgctggtgtaatcgtcgtggatttc
attgatatggaatcacgccgtgaccaattgcaagttttagaacactttaataaagccctc
aaagctgataaagcccgtccccaaatcgctcaactgaccgaactgggattagtagaactg
acccggaaacgtcaaggtcaaaacatttacgaactatttggagaaacttgctccacttgt
ggtggtttaggtcatactgtccgcttaccaggagagacagaaaaccgaatgcctattcca
gctacagatattcctgaaagatttgtagttccccaaccccaaagagagagagaaccaaga
gaagcaagagaagcaagagaaccacgtatcctcaatacccgactgccagaaccacgggaa
acctacgaaggctttggcgaagtgtttgaaaatgacactggcttcaatgctatgcactta
atcaaccatcccagctatcaggaattaggggatagtagcaagcgtcgcacccgtacccgt
cgtagtcgtattggtattaatggggtaaatggtaaagatgaacctcgcttaggtggtaac
tccttaggctttatcaacgaacaggatttagatttagataatgatgtggatttaccacct
ccagaacttccctctcctggattgggtaaatctggttggacagaaagaccagaacggaca
aaggtcaagttagaccccattaaatctgtcgttgaaccaccagagattgtctctgtggag
atgacgaatcaagaacaagaccagtacgcggaaatgggcgtttctcccttactcaagtta
gatcgggaagtgaagaacaccaggaatttaattattaacattattcaacctggccaagct
ccctctgcttttactgagccaactccagaagtaactaccccagaaaaagttatttctgat
cttcgaccagtcaaaatccaaacccagacgatagaaccacaagagtctttatttcctgcc
acagttgcaccggaaagcttgagtcctgtaggagatgaaactgaggctaacacagcgacc
atgattaatcgtcgccgtcgtcgtcgttcttcagctgtagaatcagatacatctcaaccg
gaagacttttag
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