Rossellomorea sedimentorum: V1502_01325
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Entry
V1502_01325 CDS
T11221
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rsj Rossellomorea sedimentorum
Pathway
rsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V1502_01325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsj03019
]
V1502_01325
03009 Ribosome biogenesis [BR:
rsj03009
]
V1502_01325
Enzymes [BR:
rsj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V1502_01325
Messenger RNA biogenesis [BR:
rsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V1502_01325
Ribosome biogenesis [BR:
rsj03009
]
Prokaryotic type
rRNA helicases
V1502_01325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XNZ72400
LinkDB
All DBs
Position
254881..256344
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AA seq
487 aa
AA seq
DB search
MTKFSDLNLSTSTLKAVNRMGFEEATPIQSGAIPLALEGKDVIGQAQTGTGKTTAFGIPM
VEKIDVNNPNVQGLIIAPTRELAIQVSEELFKIGQDKRVRVLAVYGGQDIQRQIRAMKKR
PHIIVGTPGRMLDHINRKTLKLQNVETLVLDEADEMLNMGFIEDIESILENVPNERQTLL
FSATMPGPIRKIANNFMTDPETVSVKSKEMTVPHIEQYFVKAHEKEKFDVLSRLLDVQSP
ELAIIFGRTKRRVDELARALTLRGYSAEGIHGDLSQAKRMTVLRQFKEGRIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVEKTTK
KTMTQMKPPTSNEALEGQQRLAMEKLVEAVNSNDLQNYRSMAKELLEDHSSVDIAAAALR
LLTKEPDDTPVQITEERPLPSKGNGRGGGKRDFKKGSNRGGKGGGRQGYSSRGRSSRNPR
RKQQRES
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaagttttcagatttaaatttaagcactagtacattaaaagccgtcaaccgcatg
ggttttgaggaagcgactccaatccagtcgggtgcgattccgttggctttagaaggcaaa
gacgttatcggccaggctcagacaggtactggtaaaactactgcattcggtattccaatg
gtagagaaaatcgatgtaaacaacccgaacgttcaagggcttatcatagcgccgacacgt
gaactggctatccaggtttcagaagaacttttcaaaatcggtcaggataaaagagtccgc
gttttggctgtatacggaggccaggatattcaacgccagatccgtgcgatgaagaaacgc
ccgcatatcatcgtcggtacacctggacgtatgcttgatcatatcaaccgtaaaacattg
aagctgcaaaacgttgagacgcttgtgcttgatgaagcggatgaaatgctgaacatggga
ttcatcgaagatatcgaatccatcctggaaaacgttccgaacgaacgccagacgctattg
ttctcagcgacaatgccgggaccgatccgcaaaattgcgaacaacttcatgacagatcct
gaaacggtcagcgtgaagtcaaaagaaatgactgttccgcatatcgagcagtatttcgtt
aaggcacatgaaaaagaaaaattcgatgtgctttcccgtttgctcgacgttcaatcacca
gaactggcaatcattttcggacgcacgaagcgtcgtgttgatgaacttgctcgtgcattg
acattaagaggatactctgcggaaggaatccatggcgacttgagccaggcaaaacgtatg
accgttcttcgccagttcaaagaaggccgaatcgatgtccttgttgcgactgacgtagca
gcacgcggacttgatatttccggtgttactcacgtttataacttcgatatccctcaagat
ccagaaagctacgttcaccgaatcggacgtacaggacgcgcagggaaagaaggtatggcg
atgacattcgttacaccaagagaaatgggttaccttcgcattgtagaaaaaactacgaaa
aaaaccatgacgcaaatgaagccgccaacttccaacgaagcattggaaggacagcagcgt
ttagcgatggagaagttagtggaagcagtaaactccaatgaccttcaaaattaccgcagc
atggcaaaagaacttcttgaagaccacagcagtgtggatatcgcagcagcagctcttcgt
cttctgacaaaagagccggacgatacaccggttcagattacagaagaaagaccgcttcca
agcaaaggcaatggacgcggcggcggaaagcgcgacttcaaaaaaggttccaaccgcggt
ggcaaaggcggaggaagacagggttactcttctagaggacgctcttcaagaaaccctcgc
cgcaagcagcaacgcgaatcttaa
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