Rossellomorea sedimentorum: V1502_04320
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Entry
V1502_04320 CDS
T11221
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rsj Rossellomorea sedimentorum
Brite
KEGG Orthology (KO) [BR:
rsj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rsj03009
]
V1502_04320 (rlmD)
Enzymes [BR:
rsj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
V1502_04320 (rlmD)
Ribosome biogenesis [BR:
rsj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
V1502_04320 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
Methyltransf_25
MTS
Methyltransf_32
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
XNZ72956
LinkDB
All DBs
Position
890580..892013
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AA seq
477 aa
AA seq
DB search
MLHYICGEVLKIGSETVKKNENTVKIKEKQQFPLTIKRLGINGEGVGYFKRQVVFVPGAL
PGEEVVVEAVKVHPKFAEGRVKKVRKRSEHRTKPPCPVYEQCGGCQLQHLSYEQQLVEKR
DILLQALERHTKFDLEKLEVKPMIGMVEPWYYRNKSQFQLGFRDGKIISGLYSLNSHKLV
DIPECIVQHPSTNKVTNTVKKILSDFKVPIYNERTKKGIVKTVVTRVGVTTGEVQVVLVT
VGKDLPHKDLILAEINKRLPEVKSVAQNINPKSTSLIFGKETIHLYGTESIVERLDKFSY
ELSARAFFQLNPTQTIQLYNEVRDAAALTGHEKLVDAYCGVGTIGMWLSNGAKEIRGMDV
VKEGIENARKNSRKFGMENASYEVGTAEEWLPKWKAEGWRPDVVVVDPPRTGCEPSFLNT
ILKVKPKKFIYVSCNPSTLAKDLKTLSKAYEVEYIQPVDMFPQTAHVESVAKLILKK
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcttcattatatttgtggagaagtattgaaaataggaagtgaaacagtgaagaaaaat
gaaaacacagtgaagataaaagaaaaacaacaatttccgctgaccatcaaaaggcttggc
attaatggagaaggagtcggctactttaaaagacaggttgtatttgttcctggtgcgctc
ccgggtgaagaggtagttgtcgaagcggttaaagtgcatcccaagttcgcggagggccgt
gtgaagaaagtaagaaaacggtcggaacaccggacgaagccgccctgccctgtctatgaa
caatgcggaggctgccagctgcagcatttaagctatgaacagcagcttgtggaaaaaaga
gatattcttctgcaggcactggaacgccacacaaaatttgatctggaaaagctggaggtc
aagccgatgatcggcatggtggaaccttggtattaccggaacaaaagccaatttcagttg
ggattcagggatggcaaaatcatttccgggttgtacagcctgaattcccacaagctcgtg
gatataccggaatgcatcgttcagcatccttctacaaacaaagttacaaatacagtaaag
aaaattctgagtgactttaaagtgccgatttataatgaaagaaccaaaaaaggaatcgta
aaaacggtggtcaccagagtgggcgtgacaaccggcgaggttcaagttgttctggtaaca
gttggaaaggaccttccgcataaagacttgatactggctgaaatcaacaaacgtctgccg
gaagtgaaatcggtggcccagaatatcaacccgaaatcaacttccctcattttcggtaag
gaaacaattcacctctatggtacagaatcgattgttgagcgtcttgataagttttcctat
gaactgtcggcgcgtgcattcttccaattgaatccgacacaaactatccagctctataac
gaagtaagggatgcagcagctttgacgggacatgaaaaactggttgatgcgtattgcggt
gtcggtacaattggcatgtggctctcaaacggagcaaaggaaattcgcggaatggatgtt
gtaaaagaaggaatcgagaatgccaggaaaaacagcaggaaatttggcatggaaaatgca
tcttatgaggtcggaacggcagaagaatggctgccaaaatggaaggccgagggctggagg
ccggatgttgttgttgtagatccgccccgaacaggatgcgagccaagcttcttaaataca
atcctgaaagtgaagccgaaaaaattcatttatgtatcatgcaatccatctacgcttgca
aaagatttgaaaacattaagcaaagcctacgaagtagaatatatccagccggtggatatg
ttcccacagacagctcatgtggaaagtgtcgcgaagctgatattgaaaaagtaa
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