Rossellomorea sedimentorum: V1502_07575
Help
Entry
V1502_07575 CDS
T11221
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rsj Rossellomorea sedimentorum
Pathway
rsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V1502_07575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsj03019
]
V1502_07575
Messenger RNA biogenesis [BR:
rsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V1502_07575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
CopK
Motif
Other DBs
NCBI-ProteinID:
XNZ73560
LinkDB
All DBs
Position
1558620..1560287
Genome browser
AA seq
555 aa
AA seq
DB search
MSKKKNESIKIIPLGGVGEIGKNMYVIEVDEEIFVIDAGLMFPEDEMFGIDMVIPDIQYL
VENKERVKGIFLTHGHEDAIGAITYVLRKIKAPVYGTKLTNALVKGRLKDEEFKEDIKFY
NVHSDSKLYFEGVDVTFFRTTHSIPDSVGVSINTSEGSIVHTGEFKFDQAAKGLYRPDMG
KMAKIGDNGVLCLLSDSTEAERPGYTTSEEVIANQLNSAFHAAKGRIIVASYASNLIRIQ
QVFDAAYKNNRKVAVVGKSLERVYEIALNLGYLKIKDDVIIPIQDISKYNEDEIVVIATG
DQGEPFEALQKMAKQNHKLLNIQDGDSVFITATPSHGMELTMAKTVDMLYRSGAHVLTAN
KKVHVSGHGSQEDLKLMLNLMKPKYFIPIQGEYRMLIAHSKVANSVGISHNRVFILDKGD
VAQYKDGKMKMSGRVQAGNVLIDGIGVGDVGNIVLRDRKLLSQDGIFIVVVTISRRGKTL
ISGPEIISRGFVYVRESEKLMDESTQLVKQIVDGYLAKGTFEWSNIKQDIRDQLNHLLFG
KTRRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagaaaaagaatgaaagcattaagatcattcccctcggaggagtgggggagata
ggcaagaatatgtatgtaatagaagtggatgaggaaatcttcgtcatcgatgcagggctc
atgttccctgaagatgaaatgttcggtattgatatggtcataccggatatccagtatcta
gtggaaaacaaagaacgtgtgaaaggaatattccttactcatggtcacgaagatgcaatt
ggtgcgataacgtacgttcttagaaaaattaaagcccctgtctatggcacaaagttgaca
aatgctttggtaaaaggaaggcttaaggatgaagaattcaaggaagatatcaaattttat
aacgtccactctgacagtaagctgtattttgagggagtcgatgtaacattcttcaggaca
acccacagcatccccgattctgtcggagtcagcattaatacttcagaaggatccattgtc
catacgggagaatttaagtttgaccaggcggctaaaggtctgtaccgcccggatatgggc
aaaatggcgaagatcggggacaatggggtgctttgtctgctgtctgacagtacggaagca
gaaagacctggatatacaacatcggaggaagttatcgccaatcaattgaattcagctttt
catgcggcaaaaggcagaatcatcgtggcgagctatgcttccaatttgatcaggattcag
caggtttttgatgcggcctataaaaataatagaaaagtagcggtcgtcggcaaaagcctt
gaaagagtgtacgaaattgctttgaatcttggatatctcaagatcaaggatgatgtcatc
attcctatccaggacatttcgaaatacaatgaagatgaaatcgttgtcattgctactggc
gatcaaggggagccatttgaagcactgcagaaaatggctaaacaaaatcataaactttta
aatatccaggatggggattccgtcttcataacggctacaccttcacatggaatggaactt
acaatggctaaaacggtggacatgctataccgttcaggtgcacatgtcctgacagcgaat
aagaaagttcatgtttccggacatggcagccaggaagatttgaagctcatgctgaacctg
atgaaacctaagtacttcattccgattcaaggtgagtacagaatgctgattgcccacagc
aaagttgccaattcggtcggcatttcccataacagggtattcattcttgataaaggggat
gtagctcaatataaagatggaaagatgaagatgagcggcagggttcaggcaggaaacgtc
ctcattgacggaataggtgtcggtgatgttggcaacatcgtcctgcgtgacagaaagctg
ctttctcaagacggtatttttattgtcgttgtgacaataagccgcagaggaaaaacactg
atttccggtcctgaaatcatttcccgcggatttgtatatgtccgcgagtcggaaaaactg
atggatgagtccacacaactcgtaaaacaaatcgtcgatggttacctggcgaaaggaacc
tttgaatggtccaacatcaagcaggatatccgtgatcaattaaaccatcttctattcggc
aaaactagaagaaggccaatgatcctgccaatcatcatggaagtataa
DBGET
integrated database retrieval system