Rossellomorea sedimentorum: V1502_12740
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Entry
V1502_12740 CDS
T11221
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rsj Rossellomorea sedimentorum
Pathway
rsj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
V1502_12740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsj03400
]
V1502_12740
Enzymes [BR:
rsj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
V1502_12740
DNA repair and recombination proteins [BR:
rsj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
V1502_12740
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
XNZ70753
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Position
2576188..2578032
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AA seq
614 aa
AA seq
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MKPMLPTLFEETPVKGNWKYEVKYDGFRGLLLIYSQEEIHLISRNGNDLLPQFPEIHRAV
LKILQEEIWTLPVFLDGEIVLLENDYKSNFAGLQVRGRMKTTKNIQEASVLNPCTYLAFD
SLHSAGKRITSTSYSNRKKEMISLFKKAGLPLEVKYGSSAGIQMIPSYSDSKRVWDTVRA
FDGEGLIAKSEESLWEEGRRTTTWRKMKNWKKAECFILSHDRNNGYYEVGVYKDKQVIGI
GAFYFGISPEEKNALNSIIKENAHTERDGRFLLHPAICVELKYLEWYEEQMREPHFHQFL
FNLKPEECTWVQFMLDEVSIPESVEVTHPDKPLWESPSLDKLQYIRYLRKASSRLLFFLG
QRPLTVIRLPHGIFGESFYQKNCPDYAPDFVKTIRIEKIDYIVCDDLETLMWLGNQLAIE
FHIPFQKIGSPYVNEIVFDLDPPSRDYFHLAVKAATEMKNVFDQLNLISFIKTSGNKGLQ
IYIPLGEGYKWEDTHLFTEFMANYLVNQFPEEFTTERLKKNRNNRLYVDYIQHAEGKTII
SPYSVRANEDALVAAPLFWDEVTQDLRPETFTMEKVLERLKKKGCPFAGYEEAKAKQNFE
EILSFLKSNTGKLQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgctgccgactttatttgaagaaacacctgtaaaaggtaattggaagtat
gaagtgaaatatgatggcttcagaggtctcttgttgatatattctcaagaggagattcat
ttgataagcaggaatggaaacgatctgctgccacaattccctgagatccacagagctgtt
ttaaaaattcttcaggaagaaatatggacacttcccgttttcttggatggagagatcgtc
ctccttgaaaatgattacaagagcaattttgctggtcttcaagtcagaggcaggatgaaa
accacgaagaacatacaagaagcatcagtcctgaatccctgtacctatctcgcctttgat
tcgcttcactcagcaggtaaaagaataacaagtactagttatagcaatcgtaaaaaggaa
atgatctccctctttaaaaaggcggggctccctttggaagtaaaatatggctcttctgct
ggaatacagatgattccctcttatagcgacagcaagcgagtttgggatactgtaagggcg
tttgatggagaaggattgattgccaaatctgaagaaagtctttgggaagaaggaaggcgg
acaactacatggcgtaaaatgaaaaattggaagaaagccgagtgttttatcctctctcac
gaccgaaataatggatactatgaagtcggtgtatataaggacaaacaggttataggcata
ggtgccttttactttggaatcagtccggaagaaaaaaatgcattaaattcaataatcaaa
gaaaatgcgcatactgaaagagatggtcgattcttacttcatccagccatatgtgtggaa
ctaaaatacttggaatggtatgaagaacaaatgagggaaccccactttcaccaatttctt
tttaatctcaaaccagaggaatgcacttgggtacaattcatgcttgacgaagtgtccata
cctgaaagcgttgaagtcacacatccagacaagccgctgtgggaatctccctccctggat
aaacttcagtatatacgttatttaagaaaggcatcttcccgtttgttgttctttcttgga
cagcggcctttaacggttatcaggctcccccacgggatatttggggaatctttttatcaa
aaaaactgccccgactacgctccagactttgtaaagaccatcagaatagaaaaaattgat
tacatcgtatgtgatgacctggaaaccctgatgtggcttggaaatcaacttgccatagaa
tttcacattccttttcaaaaaatagggtcaccttatgtgaatgaaatcgtctttgacctt
gacccgccttccagggattatttccacctggctgtcaaagctgcaactgaaatgaaaaat
gtatttgaccagcttaacttgatcagctttattaaaacgtcaggaaataaggggctgcaa
atctatataccgctcggagaaggctataagtgggaagacacccacctgttcacagaattc
atggccaattacttagtcaatcaattcccggaagaatttacaacggaaagattgaaaaaa
aacagaaataatcgtttatacgtggactatattcagcatgctgaaggcaagacaatcatc
tccccgtactcagtaagggcgaatgaagatgccctcgtagcagcccccctgttttgggat
gaggttacacaagacctgagaccggagaccttcaccatggagaaggtgttagaaagacta
aagaaaaagggctgcccctttgccggttatgaagaagcaaaggcgaaacagaacttcgag
gaaattctctcttttctcaaatcgaatacgggcaagcttcaataa
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