Rossellomorea sedimentorum: V1502_14755
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Entry
V1502_14755 CDS
T11221
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rsj Rossellomorea sedimentorum
Pathway
rsj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rsj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V1502_14755 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsj03021
]
V1502_14755 (rpoD)
Transcription machinery [BR:
rsj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V1502_14755 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
HTH_20
DUF2316
tify
DUF2408
Motif
Other DBs
NCBI-ProteinID:
XNZ71133
LinkDB
All DBs
Position
complement(2971302..2972432)
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AA seq
376 aa
AA seq
DB search
MAEKSARSKEVESEVTVDQVKEQLMELGKKRGVLTYEDIAEKLANFELESDTMDEFYEQL
GEQGVEIINENEEDDDPNIQQLNKADDEEFDLNDLSVPPGVKINDPVRMYLKEIGRVDLL
SAQEEISLANRIEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAV
EKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGR
EPSPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDAEAQSPSEHAA
YELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALR
KLRHPSRSKRLKDFLE
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaagtcagcacgttccaaagaggtagagtcagaagttacagtagatcaggtg
aaagaacagttaatggagctcgggaaaaaacgaggcgtattaacatatgaagatatcgca
gaaaaattagctaattttgaattagaatcggatactatggatgagttttatgaacaactt
ggtgagcaaggggttgaaatcatcaacgaaaatgaagaagatgacgacccgaacatccag
cagttaaataaagcggatgacgaggagttcgacctgaacgacctgagtgttcctcctgga
gttaaaatcaatgaccctgtgcgcatgtacttaaaggaaatcggaagagtagatcttttg
tctgcgcaagaggaaatctccctggctaaccggattgaagagggtgacgaggaagcgaag
cgtcgtcttgctgaagccaaccttcgtcttgtcgtaagtattgccaagagatatgtagga
cgcggaatgctgttccttgatttgatccaggaaggtaacatgggtctgattaaagcggtt
gaaaagttcgattaccgtaaaggctttaaattcagtacgtatgccacttggtggatccga
caagcgattacccgtgccattgctgaccaggcaagaacgattcgtattccagttcatatg
gttgagaccatcaataaattaatcagggtacagcgtcagcttctgcaggacttaggccgt
gaaccttcacctgaagaaattgctgaagaaatggatctgacacctgaaaaagtccgggag
attctcaagattgcgcaagaacctgtttccctggaaacaccgatcggtgaagaggatgac
tctcatcttggtgacttcattgaagatgcagaagctcaatctccttctgaacatgctgca
tatgaactgcttaaagaacagctggaggatgtacttgataccttaacggatcgagaagaa
aacgtcctgagactgcgttttggccttgatgacggtcgaacaagaactcttgaagaagtc
ggaaaagtattcggtgtaacaagagaacgtattcgtcaaatcgaagcaaaagcattgaga
aaactgcgtcaccctagcagaagcaagcgcttgaaagacttcttggaatag
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