Cereibacter sphaeroides KD131: RSKD131_0443
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Entry
RSKD131_0443 CDS
T00844
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rsk
Cereibacter sphaeroides KD131
Pathway
rsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSKD131_0443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsk03019
]
RSKD131_0443
03009 Ribosome biogenesis [BR:
rsk03009
]
RSKD131_0443
Enzymes [BR:
rsk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RSKD131_0443
Messenger RNA biogenesis [BR:
rsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RSKD131_0443
Ribosome biogenesis [BR:
rsk03009
]
Prokaryotic type
rRNA processing factors
RSKD131_0443
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
FXR_C1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ACM00303
LinkDB
All DBs
Position
1:429241..431913
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AA seq
890 aa
AA seq
DB search
MLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAASGDA
VQSGDVAGMDVVDLGEETGADALYETDGSDAGAADSGQPEASDADEKPYRAMDHASDGDD
EIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLA
GRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRR
DYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYRTAKD
FMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAID
VNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKRL
KDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQV
LRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIALIEARYGMAVRVEADPSLSSPDY
VIEKFKTATRVVPEAVKVISGSADLMGAPVDEPEDDWVEEEPEIVEEAEEVAEAAEAAPS
EGQPKKKRRRRRRRRNGVNGANGSDAQENGDEGDESDEDEGDAADEPEAVEAAAAVPELA
PEAVVSAPEPAAVEPEPAPAEPVAAPAAEEPAAPRKRTRTRKPKVTEEAPAEAAAEAPAE
APAAEAPAKEPKKPRTRTSRSRKTAAAAEAAPAVEVAVTVDETPAEASLEIARTTEAAPE
TTPEAPAAEAPAAETPVAETPAPQPEPVAEETGEGEDNKPKRRGWWSIGR
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgcttatcgatgccacccacccggaggagacccgggtcgtggtggtggacggaaacaag
gtcgaggagttcgacttcgagaccgtcaacaagcggcagctcgccggcaacatctatctc
gccaaggtaacgcgcgtcgagccgtcgctgcaggcggccttcgtcgattacggcggcaac
cggcacggcttcctcgccttcgccgagatccaccccgactattaccagatcccggtcgcc
gaccgtaaggcgctgctcgaggaagagcgggcctatgcgcgggcggaggatgacgaggac
cacggccgctcgcgccgccggtcgcgccccgctccggccgctgcggcctcgggcgatgcg
gttcagtccggcgatgtggcgggcatggatgtcgtcgatctgggcgaggagacgggtgcc
gacgcgctctacgagaccgatggctccgacgcgggtgccgccgacagcgggcagcccgag
gcatctgatgcggacgaaaagccctaccgggcgatggaccatgcctcggatggcgacgac
gagatcgaatccgtggccgacgaggatgtggccgaggagatccccgcgcccaggaagccc
cgctcgcgccgctacaagatccaggaagtcatcaaggtgcgccagatcatgctggtgcag
gtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacctacctcagcctcgcc
gggcgctactgcgtgctgatgcccaacaccgcgcgcggcggcgggatctcgcgcaagatc
acccaggccgccgaccgcaagaagctcaaggagatcgcctccgagctcgaggtgccggaa
ggcgcgggcctcatcatccgcaccgccggcgccaagcgcaccaagcaggagatccggcgc
gactacgaatatctcctccgcctctgggagcagatccgcgacctcacgctgaaatcggtc
gcgcccgcaccgatctacgaggagggcgacctcatcaagcgcacgatccgcgacctcttc
aaccgcgagatcgaggaagtgctggtcgagggcgagacgggctaccgcaccgccaaggat
ttcatgcggatgatcatgccggcccacgcccggcaggtgatccgctacgatgagccgatg
ccgctcttcgcgcgctatcaggtggaaagctacctctcgggcatgttcaacccggtggtc
cagctgaaatccggcggctacatcgtcatcggtgtgaccgaggcgctggtcgccatcgac
gtgaactccggccgggccaccaaggaaggctcgatcgaggaaaccgcgctcaagacgaac
ctcgaggccgccgaagaggtggcgcgccagctgcggctgcgcgacctcgccggtctgatc
gtcatcgacttcatcgacatggaagagcgcaagaacaacgccgccgtcgagaagcgcctg
aaggacaagctgaagaccgaccgcgcgcggatccaggtcggccgcatctcgggcttcggc
ctgatggagatgagccgccagcgcctccgcccggggatgctcgaatcgaccacccagccc
tgcgcccactgccacggcacgggtctgatccggtcggacgacagcctcgcgcttcaggtc
ctgcgccagctcgaggaagagggcacccgcaagcgctcgaaggaagtgcttcttcgcgca
ccgattgcggttgtcaacttcctgatgaacagcaagcgcgagcatatcgccctgatcgag
gcgcgctacggcatggccgtgcgtgtcgaggccgatccctcgctctcgagccccgattat
gtgatcgagaagttcaagaccgcgacccgcgtggtgccggaagccgtgaaggtgatttcg
ggcagcgccgatctgatgggtgcgccggtggacgagcccgaggacgactgggtcgaggaa
gagcccgagatcgtcgaggaggccgaggaggtcgcggaagcggccgaggcggctccgtcc
gagggtcagccgaagaagaagcgccgtcgtcggcggcggcgtcggaacggcgtgaacggc
gccaacgggtccgacgcgcaggagaacggcgacgagggcgacgagtcggacgaggatgag
ggcgatgccgccgacgagccggaggccgtcgaagctgccgccgccgtcccggagctggcg
cccgaggccgtcgtgagcgcgcccgagccggccgcggtcgagccggagccggcccccgcc
gagccggtggccgcgcccgccgccgaggagcccgccgccccgcgcaagcgcacccggacg
cggaagccgaaggtgacggaggaggctccggccgaagccgccgccgaggcgcccgcggaa
gcccccgccgccgaagcgcccgccaaggagccgaagaagccccgcacccgcacgagccgc
agccgcaagacggccgccgcagccgaggccgctcccgcggtcgaggtggcggtgacggtg
gacgagacgccggcggaagcctcgcttgaaatcgcccggacgaccgaggcggccccggag
acgacgcctgaggcgcccgccgccgaagcccctgccgccgagacgcctgtggccgagacg
cctgcgccgcagcccgagccggtggccgaggagacgggcgagggcgaggacaacaagccc
aagcgccgcggctggtggtcgatcggccgctga
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