Cereibacter sphaeroides KD131: RSKD131_1110
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Entry
RSKD131_1110 CDS
T00844
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rsk
Cereibacter sphaeroides KD131
Pathway
rsk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSKD131_1110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsk03400
]
RSKD131_1110
Enzymes [BR:
rsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSKD131_1110
DNA repair and recombination proteins [BR:
rsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RSKD131_1110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
Cas3-like_C_2
SecA_DEAD
AAA_30
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ACM00970
LinkDB
All DBs
Position
1:complement(1119235..1122741)
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AA seq
1168 aa
AA seq
DB search
MSLMQNGTRILLGGAPEGYDARLVAKELDRGAPVIHVARDDKRLEAMRTALAVMAPRAVV
LELPAWDCLPYDRVSPNPEISARRMATLAALAHGMPGAFVLLTTLNAATQRIPAREVLRA
ASFSARVGDRVDEGRLRSYLARMGFSLTDTVTEPGDYAIRGGIVDIYPPGVAGPVRLDFF
GDVLDGARRFDPETQRTVEKLDLVELAPVSEVMLDEGAITRFRQNYRIEFGAAGTDDPLY
EAVSAGRKHQGMEHWLPFFHERLETLFDYLPEAAVMLDDQVTPARISRWEGIADQYDARR
EAMTAKGRLDTVYKPAAPDLLYLDEAAWEAAVAGHRVIQLSPLAQSPGPGVLDAGGRMGR
SFAPERQAENISLFGALVDHVRALREDRQVVIASWSEGARERLKGLLEEAGLQGTKLVQD
IRDVPEGRGGTHLMVWALEQGFTAPGLAVISEQDVLGDRLISKPKKRRKAENFLREHDTL
TPGDLVVHVEHGVGRYMGLETLRVPQPPSNKPGPPHDYLHLVYAEEAKLYLPVENIELLS
RYGHEEGLLDKLGGGAWQAKKARLKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAF
SARFPYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAALAGMQVA
VICPTTLLARQHFRSFSERFRGFPMKVRQLSRFVSAKEAAETRAGLADGTVDICIGTHAL
LAKGVKLKNLGLLIIDEEQHFGVSHKERLKEMRSEVHVLTLTATPIPRTLQLSLTGVRDL
SIIATPPVDRLAIRTYVSEFDTVTIREALLRERYRGGQSFFVVPRLSDLPDMEAFLRDHV
PEVSYVVAHGQLAAGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGL
SQLYQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNLASHDLDLR
GAGNLLGEEQSGHIKEVGYELYQQMLEETIQKIRSGELQGLSEPDEQWAPQINLGVPVLI
PEEFVPDLDVRLGLYRRLSGLTTKVELEGFAAELIDRFGPLPREVNTLLLVVRIKAMCKR
AGISRLETGPRGATVQFHNDKFANPAGLVDFIKAQGEAARVKDNKIVLARDWKTEGERIK
GAFAIARDLAEKVVKPEKTPAKVARPAG
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctcatgcagaacggaacgcggatcctcctcggcggtgcgcccgagggctacgat
gcccggctggtcgcgaaagagctcgaccgcggtgcccctgtcattcacgtcgcgcgcgac
gacaagcggctggaggccatgcgcacggcgctggccgtcatggcgccgcgcgccgtggtg
ctggagcttcccgcctgggactgcctgccctacgaccgggtctcgcccaaccccgagatc
tcggcgcggcggatggcgacgctggcggcgctcgcccacgggatgccgggcgccttcgtg
ctgctgaccacgctcaatgccgcgacccagcgcattcccgcgcgcgaggttctgcgggcg
gcctccttctcggcccgcgtgggcgaccgggtggatgaaggacggctgagatcctatctc
gcccgaatggggttctcgctcaccgacacggtgacggagcccggcgactatgcgatccgc
ggcggcatcgtcgatatctacccgccgggcgtggcggggccggtgcggctcgacttcttc
ggcgacgtgctggacggggcgcgccgcttcgaccccgagacccagcgcacggtcgagaag
ctcgacctcgtggaactggccccggtgtcggaggtgatgctggacgagggcgccatcacc
cgcttccgccagaactaccggatcgagttcggcgcggcggggacggacgacccgctttac
gaggccgtgtcggcgggccgcaagcatcaggggatggagcactggctgcccttcttccac
gagcggctcgagacgctcttcgactatctgcccgaggcggcggtgatgctcgacgatcag
gtgacgcccgcgcggatctcgcgctgggaggggatcgccgaccagtatgacgcgcggcgc
gaggcgatgacggccaaaggccggctcgacacggtctacaagcccgccgcgccggatctc
ctctatctcgacgaggccgcctgggaggcggccgtggcggggcatcgggtgatccagctc
tcgccgctggcccagagcccgggtccgggcgtgctcgacgcgggcgggcggatggggcgc
agcttcgcgcccgagcgtcaggccgaaaacataagccttttcggcgcattggtcgatcat
gttcgcgccttgcgcgaagaccggcaggtggtgatcgcgagctggtccgaaggcgcgcgc
gaacggctgaaggggcttctcgaggaagcgggcctgcaggggacgaagctcgttcaggac
atccgcgacgtgcccgaggggcgcggcggcacgcatctgatggtctgggcgctggagcag
ggcttcaccgcgccgggccttgccgtgatctcggaacaggatgtgctgggcgaccggctg
atctcgaagccgaagaagcgccggaaggccgagaatttcctgcgcgagcacgatacgctg
acgcccggcgatctcgtcgtccatgtcgagcatggcgtgggccgctacatggggctcgag
acgctgcgcgtgccgcagccgccctcgaacaagccgggcccgccgcacgattacctgcat
ctcgtctatgccgaggaggccaagctctacctgccggtcgagaacatcgagcttctgagc
cgctacgggcacgaggaggggctcctcgacaagctgggcggcggggcatggcaggccaag
aaggcccgcctcaaggagcgcatccgcgagatcgccgagcggctcatgcggatcgcggcc
gagcggcacctgcgccatgcgccgatcctcgaggcgccgcattcgctctgggaggccttc
tcggcccgcttcccctatcaggagacggacgaccagctgtcggccatcgccgatgtcgtc
aaggatctggaatccggcagcccaatggaccggctcgtggtgggcgacgtgggcttcggc
aagaccgaggtcgcgatgcgggcggcgttcgtggcggctctggcggggatgcaggtggct
gtcatctgcccgaccacgctgctcgcccgtcagcatttccgcagcttttccgagcgtttc
cgcggctttccgatgaaagtgcgtcaactgtcgcgcttcgtctcggccaaggaggcggcc
gagacgcgggcgggtctcgccgacggcacggtcgatatctgcatcggcacccatgcgctt
ctggccaagggcgtgaagctgaagaacctcgggctcctcatcatcgacgaggagcagcat
ttcggcgtgtcgcacaaggagcggctgaaggagatgcgctccgaggtccatgtgctgacc
ctcaccgcgacgcccatcccgcggacgctgcaactctcgctcaccggcgtgcgggatctg
tcgatcatcgcgacgccgcccgtggaccggctcgcgatccgcacttacgtctcggaattc
gacacggtgacgatccgcgaggcgcttctgcgcgagcggtatcggggcgggcagagcttc
ttcgtcgtcccgcggctctcggatctgccggacatggaggccttcctgcgcgaccatgtg
cccgaggtctcctatgtggtggcccacggccagctggccgcgggcgagctcgacgagcgg
atgaacgccttctacgacggcaagttcgacgtgcttctggcgacgacgatcgtagagtcg
ggcctcgacatcccgaccgccaacacgatgatcgtccatcgtgcggacatgttcgggctg
agccagctctaccagatccgcggccgggtgggccgggccaagacgcgggcctattgctac
ctcacgacgaagccgcgcgcgccgctcacgccgcaggcgatcaagcggctgcggctgctc
gcctccctcgacagtctcggcgcgggcttcaatctcgcctcgcacgacctcgacctgcgc
ggggcgggcaacctcctcggcgaggaacagtcgggccatatcaaggaggtgggctacgag
ctttaccagcagatgctggaggagacgatccagaagatccgctcgggcgagctgcagggc
ctgagcgaacccgacgagcaatgggcgccgcagatcaacctcggcgtccccgtgctgatc
cccgaggagttcgtgcccgatctcgacgtgcggctcggactttaccgcaggctctcgggt
ctcacgaccaaggtcgagctggaagggttcgcggccgagctgatcgaccggttcggcccg
ctgccgcgcgaggtcaacacgctcctcctcgtggtgcgcatcaaggccatgtgcaagcgc
gcgggcatctcgcggctcgaaaccggcccgcgtggagcgacggtccagttccacaacgac
aagttcgccaatccggcgggcctcgtggatttcatcaaggcgcagggcgaggcggcgcgg
gtgaaggacaacaagatcgtgctcgcgcgcgactggaagaccgaaggcgaacggatcaag
ggcgccttcgccatcgcccgcgatctggccgagaaggtggtgaagccggagaagaccccc
gccaaggtcgcccgtccggcgggctag
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