Cereibacter sphaeroides KD131: RSKD131_2876
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Entry
RSKD131_2876 CDS
T00844
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rsk
Cereibacter sphaeroides KD131
Pathway
rsk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSKD131_2876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsk03019
]
RSKD131_2876
03009 Ribosome biogenesis [BR:
rsk03009
]
RSKD131_2876
Enzymes [BR:
rsk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RSKD131_2876
Messenger RNA biogenesis [BR:
rsk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSKD131_2876
Ribosome biogenesis [BR:
rsk03009
]
Prokaryotic type
rRNA helicases
RSKD131_2876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACM02736
LinkDB
All DBs
Position
1:complement(2932384..2934717)
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AA seq
777 aa
AA seq
DB search
MTQTDIAAPLAAALAAKGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQ
ILQGADRLLFADTPIALAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRAL
DRGAHIVVGTPGRLRDHIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERR
TLMFSATVPKEIEALAKEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRF
YEAPSAIVFCKTRLAVNHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIAT
DVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLT
GAKLVADWGKPPSADEVQERDDARLLEHPVLGQDLSDEMPLAEKLLERFGPAQMSAAFVR
LWREGRSAPEVLQDLAPPEPSQRAPRERGEFGEAVWYAVAVGHTGRAEARWLLPKICEAG
GVTKNEIGAIRVQQEQTFVQIAKAAAGKFGAALEIEAGVGMVRLDGEPILERPERAPRKP
FAERAPRARDEAPRREKAPYQPKPSRFVDEEPGEARGGWTPDDRPERAPRPRREDGAPFA
KREMNDAPRPRRESAAEDEGRKPRRTSDERPARPAAAGRSAGFKSHGGTASRSAGYKSHG
DAAPRGKRDDEGPRPYKPRGEDAPRAAGFKSHGKPVRAEGDGPRARPARSADDRPAKAGG
FKAREDRPAKPRAEGAAERPARAGFKKDFGKKDAPRKPRAEASDTSRRFTPPKKPRS
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaactgatattgccgcgccgctggccgcggcgcttgccgccaagggctacgag
tccctcactccggtgcaggaggcggtgctcgccgaaggcgtggccgggcgcgatgcgctc
gtctcggcccagaccggctcgggcaagacggtggccttcggcatcgccatcgccgaccag
atcctgcagggggccgaccggctcctgttcgcggacacgccgatcgcgctcgccatcgcg
cccacccgcgagctggcgcttcaggtcgcccgcgagctgggctggctctatggcgaggcc
ggcgcccatatcgccacctgcgtcggcggcatggactaccgcaccgagcggcgcgcgctc
gaccgcggcgcccatatcgttgtgggcacccccggccgcctgcgcgaccatatcgagcgc
ggctcgctcgatctctcgggcctgcgcgcggtggtgctggacgaggccgacgagatgctc
gacctcggcttccgcgaggatctggagttcatcctgggctcggcccccgaggaacggcgc
acgctgatgttctcggccaccgtgccgaaggagatcgaggcgctcgccaaggaattccag
caggacgccgtccgcatccagaccgcgggcgagcgcaagcagcatgccgacatcgaatat
cgcgccctgaccgtcagtgcgcgcgacaaggaacatgcgatcttcaacgtgctgcgcttc
tatgaggcgccctcggccatcgtcttctgcaagacgcggctggcggtgaaccatctgctc
gcgcggatgggcaaccgcggctttcaggtcgtggcgctctcgggcgagctttcgcagcag
gagcggacccatgcgctgcaggcgctgcgcgacgggcgcgcccgggtctgtatcgcgacc
gacgtggccgcgcgcggcatcgaccttccggggctcgagctcgtgatccacgccgatctg
cccaccaactccgagacgctgctccaccgctcgggccggaccggccgtgcgggctccaag
ggcgtgtcggtgctgatcgcggcgccgtccgaagtgcgcaaggcgcagcggcttctgacc
ggcgcgaagctcgtggccgactggggcaagccgccttcggccgacgaggtgcaggagcgc
gacgacgcgcggctgctcgagcatccggtgctggggcaggatctgtccgacgagatgccg
ctggccgagaagctgctggaacggttcggcccggcgcagatgtccgcggccttcgtccgg
ctctggcgcgaggggcgctcggcgcccgaggtgctgcaggatctggccccgccggagccc
tcgcagcgcgcgccgcgcgagcggggcgagttcggcgaggcggtctggtatgcggtggcc
gtcggccacaccggccgggccgaggcgcgctggctgctgcccaagatctgcgaggcgggc
ggcgtgaccaagaacgagatcggcgccatccgcgtccagcaggagcagaccttcgtccag
atcgcgaaggcggccgccgggaagttcggcgccgcactcgagatcgaggcgggcgtgggc
atggtgcgcctcgacggcgagcccatcctggagcgccccgaacgcgcgccgcgcaagccg
ttcgccgagcgcgccccccgagcccgggacgaggcgccgcggcgcgagaaggcgccctac
cagcccaagccctcgcgcttcgtcgacgaagagccgggcgaggcccgtggcggctggacc
ccggacgaccgccccgagcgggcgccccggccgcgccgcgaggacggcgcgccgttcgcg
aagcgtgaaatgaacgacgccccgcggccccgtcgcgagagcgcggccgaggacgagggc
cgcaagccccgccggacctcggacgagcgtccggcgcgtccggcagcggccggccgctcg
gcgggcttcaagtcgcacggcggcaccgcctcgcggtcggcgggctacaagtcccatggc
gatgcggcgccgcgcggcaagcgcgacgacgaaggcccgcggccctacaagccgcggggc
gaggatgccccccgcgcggccggcttcaagtcgcacggcaagcccgtccgggccgaaggc
gacgggccccgcgcccgcccggcccgcagcgccgacgaccgccccgccaaggccggcggc
ttcaaggcgcgcgaggaccgtccggcgaagccccgggccgaaggcgcggccgagcggccc
gcccgcgcgggcttcaagaaggacttcggcaagaaggatgccccgcgcaagccgcgcgcc
gaagcgtccgacacgagccgccgcttcacgccgccgaagaagccgcgcagctga
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