Ralstonia solanacearum PSI07: RPSI07_1212
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Entry
RPSI07_1212 CDS
T01273
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase, deaD-box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rsl
Ralstonia solanacearum PSI07
Pathway
rsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPSI07_1212 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsl03019
]
RPSI07_1212 (rhlE)
Enzymes [BR:
rsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RPSI07_1212 (rhlE)
Messenger RNA biogenesis [BR:
rsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RPSI07_1212 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Fe-ADH
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBJ50571
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All DBs
Position
1237440..1238927
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AA seq
495 aa
AA seq
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MNTAITSEAPANESVTFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQ
TGTGKTAGFSLPIIQNLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYGKYTAL
RSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDM
GFLPDLQRIINLLPAHRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVI
YTVPDGHKQAALVHLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKT
QTERMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAG
ASGDALSLFAPGDERLLADIEKLIKRNLPRETLTDFDPTGEQARERERRERDERRNRTEI
RRSRERDERNGARVLDHTVVRPAFRASEDPFFSRPYESSAPAETAETAKLAQAAGHPRSA
KRPIAALLGGVPRKR
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgcgataacgtctgaagcaccggccaacgaatcggtgacgttcgacaccttc
ggcctgcaccccgatatcctccgggccctggccgagagcggctatacccggcccacgccc
atccaagccgccgcgattcccgtggtggtcgccggccgcgacgtgatgggcgcggcgcag
accggcaccggcaagaccgccggcttctcgctgccgatcatccagaacctgctgccggaa
gccaacaccagcgcctcgccggcgcgccatccggtgcgggccctgatcctcacgcccacg
cgcgagctggccgatcaggtctacgacaacgtcgccaagtatgggaagtacacggcgctg
cgcagtgcggtcgttttcggtggcgtcgatatgaacccgcagaccgaacagttgcgccgt
ggcgtggagatcctcgtcgccacgccgggccgcctgctcgatcacgtgcagcagcgcagc
gtgaacctgtcgcaggtgcgcatgctggtgctggacgaggccgaccgcatgctcgacatg
ggcttcctgcccgacctgcagcgcatcatcaacctgctgccggcgcaccggcagacgctg
ctgttctcggccacgttctcgcccgagatcaagaaactggcggcgagctacctgcgccat
ccgcagacgatcgaagtggcgcgcagcaacgctacggccgataacgtccgccaggtcatc
tacaccgtgccggacggccacaagcaggccgccctggtgcacctgctgcgccaacgtgcc
gaacagggcctgccgagccagtgcatcgtgttctccaacagcaagatcggctgttcgcgc
ctggcgcgcgcgctggagcgcgaaggtatcaacgccaacgccatccatggcgacaagacc
cagaccgagcgtatgcagacgctcgaggcgttcaagcagggcacggtcgacgtgctggtc
gccaccgacgtggcggcgcgcggcctcgacatctcgcagatgccctgcgtgatcaatttc
gatctgccgttcaatgcggaagactatgtccaccgcatcggccgcaccggccgcgccggc
gcttctggcgatgcgctgtcgctgttcgccccgggcgacgaaaggctgctggccgacatc
gagaagctgatcaagcgcaatctgccgcgcgagacgctcaccgatttcgatccgactggc
gaacaggcccgcgaacgcgaacgccgcgagcgcgacgagcgccgcaaccgcaccgagatc
cgccggtcccgcgagcgcgatgagcgcaatggcgcccgggtgcttgaccataccgtggtg
cgtccggctttccgggcgtcggaagatccgttcttctcgcgtccgtacgagtcgagcgca
cccgccgagacggcggaaacggccaagttggcccaggccgctggtcatccgcgcagcgcc
aagcgcccgattgccgcactgctgggtggcgtgccgcgcaagcgctga
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