Ralstonia solanacearum PSI07: RPSI07_1218
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Entry
RPSI07_1218 CDS
T01273
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rsl
Ralstonia solanacearum PSI07
Pathway
rsl03030
DNA replication
rsl03430
Mismatch repair
rsl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RPSI07_1218 (dnaE)
03430 Mismatch repair
RPSI07_1218 (dnaE)
03440 Homologous recombination
RPSI07_1218 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsl03032
]
RPSI07_1218 (dnaE)
03400 DNA repair and recombination proteins [BR:
rsl03400
]
RPSI07_1218 (dnaE)
Enzymes [BR:
rsl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RPSI07_1218 (dnaE)
DNA replication proteins [BR:
rsl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RPSI07_1218 (dnaE)
DNA repair and recombination proteins [BR:
rsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RPSI07_1218 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CBJ50577
LinkDB
All DBs
Position
1243518..1247042
Genome browser
AA seq
1174 aa
AA seq
DB search
MNSPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGK
GVKPVVGADVWITNHDERDKPGRLLLLVRNKQGYLNLCMLLARAWLSNQHRGRAEIAPEW
FGEPGVEDAPLATGLLALSGAMGGDIGMALANGNEALARKLAAQWSSVFPEAFYIELQRA
GQAGTEAYVQRAVKLAASMHLPVVATHPVQFMTPDDFTAHEARVCIAEGDLLANPRRARR
FTTDQYFKTQDEMCALFADIPSALANAVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYL
AHLAKQGLEQRMEVLFPDPAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAK
NNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRD
RVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVT
LEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYT
QGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSRADWNCSHIPL
TDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCA
RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAE
EMAEHRALFRAGAAKDGLTTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH
PAEFMAANMSLAMDDTDKVKILYDDAEGKNGLKVLPPDINASQYRFTPTDAKTLRYGLGG
VKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRAQL
LVSIGLAMEAAEQKAAAANQVSLFDLMSGDDAEEHRPELLDEAPWTTKRKLQEEKQALGF
YLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGGGYGSRDARNKTVAGVIVGLRTQ
MTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRALFKEDEVLIVQGNARHDTFTGGVRM
TAEAVMDLTQARSRYADALGLVFRDNASAARLRELLTPHLAAQTPGVRVHISYAANGARC
EAVLGEQWQVTPSDDVLASFRSALSNENVYMIYG
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgccgcgctttgtccatctccgtctccattccgaatactccatcgtcgatggc
aacgtccgcctggacgaggccgtcaaggccgccgccgccgatggcatgggcgcactggcg
ctgaccgacctcgccaacgccttcggcctggtgcgcttctacaaggaagcgcgcggcaag
ggcgtcaagcccgtcgtcggcgccgatgtgtggatcaccaatcacgacgagcgcgacaag
cccggccgcctgctgctgctggtgcgcaacaagcagggctacctgaacctgtgcatgttg
ctggcgcgggcgtggctgtcgaaccagcatcgcggccgcgcggaaatcgcccccgagtgg
ttcggcgagcccggcgtggaagacgcgccgctggccaccggcctgctggcgctgtccggc
gcgatgggcggcgacatcggcatggcgctcgccaacggcaacgaggcgctcgcgcgcaag
ctggcggcgcagtggtcgagcgtgttcccggaggcgttctacatcgagctgcagcgcgcc
gggcaggccggcaccgaggcctatgtgcagcgggccgtgaagctggccgcgtcgatgcac
ctgccggtggtcgccacgcacccggtgcagttcatgacgccggacgacttcaccgcccac
gaggcgcgcgtctgcatcgccgagggcgatctgctggccaacccgcgtcgcgccaggcgc
ttcaccaccgaccagtatttcaagacgcaggacgagatgtgcgcgctgtttgccgacatc
ccgtctgcgctggccaacgcggtgcagatcgcgcagcgctgcaacctgacgctggagctg
ggcaagcccaagctgccgctgttccccacgcccgacggcatgtcgctggacgactacctc
gcccacctggccaagcagggactggagcagcgcatggaagtgctgttccccgatcctgcg
gtgcgcgaagccaagcggcccgagtactacgcgcggctggagttcgagaccggcaccatc
atcaagatgggcttcccgggctacttcctgatcgtggcggacttcatcaactgggccaag
aacaacggcgtgccggtggggccgggccggggctcgggcgcgggctcgctggtggcatat
gcgctgggcatcaccgacctcgacccgctcaaatacaacctgctgttcgagcgcttcctg
aacccggaacgcgtgtcgatgcccgacttcgacatcgacttctgccagcacggccgcgac
cgcgtcatccattacgtgaaggagaagtacggcaaggacgccgtctcgcagatcgccact
ttcggcaccatggccgccaaggccgcggtgcgcgacgtgggtcgcgtgctcgacctgggc
tacaactttgtcgatggcgtggccaagctgatcccgttcaagccgggcaagctcgtcacg
ctggaagaggccaagaaggaagagccgctgctggccgagcgcgaggccaatgaggaagaa
gtcaaacagctgctcgaactcgcccagcgcgtcgaaggcatgacccgcaacgtcggcatg
cacgcgggcggggtgctgatcgcgccgggcaagctgaccgatttctgcccgctttacacg
cagggcggggaagatgccggcgtcgtcagccagtatgacaaggacgacgtggaagccgtc
ggcctggtgaagttcgacttcttgggcctgaccacactcaccattctcgattgggccgag
cgctacatccgcatgctcgatccgtccagggcggactggaactgcagccacattccgctg
accgacaaggcggcgttcgacatcctcaagacggccaacacggtcgccgtgttccagctg
gaaagccgcggcatgcagggcatgctcaaggacgccaagcccgaccgtttcgaggacatc
atcgccctggtggcgctgtaccgcccgggcccgatggacctgatccccagcttctgcgcg
cgcaagcacggccgcgagaaggtggagtatcccgacccgcgcgtcgagccggtgctcaag
gagacctacggcatcatggtctaccaggagcaggtgatgcagatggcgcagatcgtcggc
ggctactcgctcggcggcgctgacctgttgcgccgcgcgatgggtaagaagaaggcggag
gagatggcggagcatcgcgcgctgttccgcgccggtgccgccaaggacggcctgaccacc
gagaaggccgacgagatcttcgacctgatggagaagttcgcgggctacggcttcaacaag
tcgcacgcggcggcgtatgcgctgctggcgtactacaccgcgtggctcaaggcgcaccac
ccggccgaattcatggcagccaacatgtcgctcgccatggacgacaccgacaaggtcaag
atcctctacgacgatgcggagggaaagaacggcctcaaggtgctgccgccggacatcaac
gccagccagtaccgcttcacgcccaccgacgccaagaccctccgctacgggctgggcggc
gtgaagggcagtgggcagggcgccatcgaagacatcctgcgcgcgcgcgaagacggtccg
ttcaaggacctgttcgacttctgcgagcgcgtcgatcgccgccaggtcaaccgccgcacc
atcgaagcgctggtgcgggccggtgccttcgacagcctcaacgacaatcgcgcgcagctg
ctggtctcgatcggcctggcgatggaggcggcggaacagaaggcggccgcggccaaccaa
gtgtcgctgttcgacctgatgagcggcgacgatgccgaggagcatcgccccgagctgctc
gacgaggcaccctggaccaccaagcgcaagctgcaggaagagaagcaggcgctgggcttc
tacctgtcgggccacctcttcgacgaatgccgcgacgaggtccgccgctttgcccggacg
acgctcgccgacctcgcccgcgaggtcaacggtaatggcaatggcaacggcggcggctac
ggtagccgtgatgcgcgcaacaagaccgtggccggcgtgatcgtcggcctgcgcacgcag
atgacccagcgcggcaagatgatcgtcgtcatgctcgatgatggctcgcagagcgaggcc
accgaggtgacggtcttcaacgagctgttcgatgccaaccgcgcgttgttcaaggaagac
gaagtgctgatcgtgcagggcaatgcgcggcatgacaccttcaccggcggggtgcggatg
acggccgaggcggtgatggacctgacccaggcgcgctcgcgctacgccgacgcgctcggg
ctggtgttccgcgacaacgcgtccgccgcgcggctgcgtgaactgctgacgccgcacctg
gcggcccagacgcccggcgtgcgcgtgcacatcagctatgccgccaacggcgcacgctgc
gaagccgtgctcggcgagcaatggcaggtgacgccatcggacgatgtgctggccagcttc
cgctcggcgctgtcgaatgagaacgtctacatgatctacggctga
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