Ralstonia solanacearum PSI07: RPSI07_2354
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Entry
RPSI07_2354 CDS
T01273
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rsl
Ralstonia solanacearum PSI07
Pathway
rsl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPSI07_2354 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsl03019
]
RPSI07_2354 (rne)
03009 Ribosome biogenesis [BR:
rsl03009
]
RPSI07_2354 (rne)
Enzymes [BR:
rsl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RPSI07_2354 (rne)
Messenger RNA biogenesis [BR:
rsl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RPSI07_2354 (rne)
Ribosome biogenesis [BR:
rsl03009
]
Prokaryotic type
rRNA processing factors
RPSI07_2354 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CBJ51719
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All DBs
Position
2469315..2472362
Genome browser
AA seq
1015 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLQVPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWKAVDGAAVENRAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQAR
AFMSVVMPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLDDSKASYKMAEEAAKELEADTAYSTRKEAAKPRQEAAVKGITPEQPA
PVSVPRPERTARAEAAPAAPQAQAPAPVPAQSGFMSWLKSLFGGKPAEPVVAAPVETPKR
AEDGSRRDRGSRQDRGSRSSQRGERGERGERQGQQGGRDGQRQGQGREGRNEAREGQAQR
EGQRESQRGSRDRNRQPTETADRETVEARQPQQGQEAREGQGRRERNQERRERAPREGRE
GRESREGREGREPREGRDHREGRERDTQQAKEGASAAAPDTVEGLIDPTAAAQVPQALLD
TTVPAEAITAEGAAPGAESGSEGEERRRRGRRGRNRYRRDREGAEDVRAEGETESEGETA
AAEPATEAQPVVETVQPASPILHETVTEPVQTLAPAAIETAAPVEQEPVHAAETVAPAPA
QPAAQPAEPVTAAVATPVAETAAATIVTALAEVPAPVSTVAQASPLPIGTLQAVVADAGM
TWVHTDAQKLQAAQEEAARTVTPPRAPRERKPLPPVQQGPMILVETSRPAGGTDQ
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacgcagcaagaagaattgcgcgtcgccattgtcgat
ggccagaaactgatcgacatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaac
atctacaagggtgtcatcacccgcatcgaaccgtcgctggaagcctgcttcgtcaactac
ggcgaagagcggcacggtttcctccccttcaaggaagtcgcccgcgcctacttcaaggac
ggcgtggatgtgcgcaccgcccgcatccaggacgcgctgaccgaaggccaggaactgatc
gtccaggtggagaaggaggagcgcggcaacaagggcgcggcgctgaccaccttcatctcg
ctggccggccgctacctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgaagaccgccaggaactgcgcgaaaccatggcgcaactgcaggtcccg
gaaggcatgagcatcattgcccgcaccgccggcatcggccgctcggccgaagagctgcag
tgggacctgaactacctgatgcagctgtggaaggcggtcgacggtgccgcggtcgagaac
agggcgccgctgctgatctatctcgaatccagcctggtgatccgcgccatccgcgattac
ttccagccggacatcggtgagatcctgatcgataccgacgatatctacgatcaggcccgc
gccttcatgagcgtggtgatgcccgacaacatgaatcgggtgaagaagtaccgcgacgac
gttcccctgttctcgcgcttccagatcgaacaccagatcgaatcggcctattcgcgcatg
gtgatgctgccctccggcggcgccatcgtgatcgaccataccgaggcgctggtcgccgtc
gacgtgaactcggcgcgtgccaccaagggcgcggacatcgaagagaccgcgctgcgcacc
aacctcgaagcagccgacgagattgcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggagtcgagcaaggcccagaaggacgtcgagacccgc
ctgaaggacgcactgcgccacgaccgcgcccgcgtgcagatgggcaagatcagccgcttc
ggcctgatggagctgtcgcgccagcgactgcgtccgtcgctgtccgagggctcgcacgtc
acctgcccgcgctgcaacggcacaggccatatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacacggccgcgatccactgccag
gtgccggtggaagtggctgcgttcctgctcaacgagaagcgcccggacatcaacctgatc
gagacgcgcttcaaggtcaatgtgctgctgatcccgaacaagcatctggaaacgccgcac
tacaagctcgagcgcctgcgtcacgacgatcctcgcctggatgacagcaaggccagctac
aagatggccgaggaagccgccaaggaactggaagccgacaccgcttacagcacccgcaag
gaagcggccaagccgcgccaggaagcggcggtcaagggcatcacgccggaacagccggcc
ccggtatcggtgccgcgtcccgagcggacggcccgtgccgaggcggccccggccgccccg
caggcgcaggcgccggccccggtgcctgcacagagcgggttcatgtcgtggctgaagtcg
ctgtttggcggcaagccggccgagccggtggtcgccgcgcccgtcgagacgcccaagcgc
gctgaagatggcagccgtcgcgaccgtggcagccgccaagaccgcggcagccgcagcagc
cagcgcggggaacgcggtgagcgtggcgaacgccagggccaacaaggcggccgcgacggc
cagcgccaggggcaaggccgcgaaggccgcaacgaagcccgcgagggccaggctcagcgt
gaaggtcaacgtgaaagccagcgcggcagccgcgaccgcaatcgccagccgaccgagacc
gccgaccgcgaaacggtcgaggcacgccaacctcagcagggccaggaagcacgcgaaggc
cagggccgccgcgaacgcaaccaggaacgccgcgagcgcgcaccgcgcgaaggtcgcgag
ggtcgggaaagccgtgaaggacgtgagggccgcgaaccgcgcgaaggccgcgaccatcgt
gaaggccgtgagcgcgacacgcagcaggccaaggaaggcgccagcgccgcagccccggac
acggtggaaggcctgatcgatccgaccgcagccgcccaggtgccgcaagcgctgttggac
accaccgtaccagccgaggcaatcactgccgagggtgcagcgccgggcgcggaaagcggc
agcgagggcgaagagcgccgccgccgcggtcgccgtggccgcaatcgctatcgccgtgac
cgcgagggcgcggaagacgtgcgcgcggaaggcgaaaccgagagcgaaggcgaaaccgct
gccgctgagccggcaacggaggcacagcctgtcgtggaaaccgtccagccggcaagcccg
atcctgcacgaaaccgtgacagagccggtgcagacgctggccccggcagcgatcgaaacc
gctgcgccggtcgagcaggagccggtgcatgcggccgagactgtggcacccgctccggca
cagcctgcggcgcaaccggccgagccggtcaccgcagcggtcgcaacgcccgtggcggaa
acggccgcggccaccatcgtgacggccctcgccgaagtgccggcaccggtcagcacggtg
gcccaggcttcgccgctgccgatcgggacgctgcaggccgtggtggccgacgccggcatg
acgtgggtccacaccgacgcgcagaagctgcaggcggcgcaggaagaagcggcccgcacc
gtcacgccgccgcgcgcgccccgcgaacgcaaaccgctgccgccggtccagcagggaccg
atgatcctggtcgaaaccagccgtccggcgggcggcaccgaccagtaa
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