Ralstonia solanacearum CMR15: CMR15_11173
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Entry
CMR15_11173 CDS
T02725
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rsm
Ralstonia solanacearum CMR15
Pathway
rsm03030
DNA replication
rsm03430
Mismatch repair
rsm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CMR15_11173 (dnaE)
03430 Mismatch repair
CMR15_11173 (dnaE)
03440 Homologous recombination
CMR15_11173 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsm03032
]
CMR15_11173 (dnaE)
03400 DNA repair and recombination proteins [BR:
rsm03400
]
CMR15_11173 (dnaE)
Enzymes [BR:
rsm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CMR15_11173 (dnaE)
DNA replication proteins [BR:
rsm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CMR15_11173 (dnaE)
DNA repair and recombination proteins [BR:
rsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CMR15_11173 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CBJ37378
LinkDB
All DBs
Position
1236780..1240301
Genome browser
AA seq
1173 aa
AA seq
DB search
MNSPRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGK
GVKPVVGADVWITNHDERDKPSRLLLLVRNKQGYLNLCMLLARAWLSNQHRGRAEIAPEW
FGEPGVEAAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPASFYIELQRA
GNAGTEAYVQQAVKLAASMQLPVVATHPVQFMTPDEFTAHEARVCIAEGDLLANPRRTRR
FTTDQYFKTQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYL
VQLAKEGLEKRMEVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAK
NNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRD
RVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVT
LEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYT
QGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSKADWNCSHIPL
TDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCA
RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAE
EMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH
PAEFMAANMSLAMDDTDKVKILYDDARGKNALAVLPPDINASQYRFTPTDAKTIRYGLGG
VKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNANRAQL
LVSIGLAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLDEAPWSTKRKLQEEKQALGF
YLSGHLFDECRDEVRRFARTTLADLAREVNGNGNNGGGYGSRDARNKTVAGVIVGLRTQM
TQRGKMIVVMLDDGSQSEATEVTVFNELFDANRALFKEDEVLIVQGNARHDTFTGGVRMT
AEAVLDLTQARARYADAIGLTFRDNASAVRLRELLTPHLATQVPGVRVRISYAANGARCE
AVLGEQWQVTPSDEVLASFRSALSNENVHMIYG
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgccgcgcttcgtccatctccgtctccattccgaatattccgtcgtcgacggc
aacgtccgcctggacgaggccgtcaaggccgccgccgccgatggcatgggcgcgctggcg
ctgaccgatcttgccaacgctttcggcctggtgcgcttctacaaggaagcgcgcggcaag
ggcgtcaagcccgtggtcggcgccgacgtgtggatcaccaatcacgacgagcgcgacaag
cccagccgcctgctgctgctggtgcgcaacaagcagggctacctgaacctgtgcatgctg
ctggcgcgggcctggctgtccaaccagcatcgcggccgcgcggagatcgcccccgagtgg
ttcggcgagcccggcgtggaagcggcgccgatggccaccggcctgctggcgctgtccggc
gcgatgggcggcgacatcggcatggcgctcgccaacggcaacgaggcgctggcgcgcaag
ctggcgacgcagtggtcgcaggtgttcccggcgtcgttctacatcgagctgcagcgcgcc
gggaacgccggcaccgaggcctacgtccagcaggccgtgaagctggccgcgtcgatgcag
ctgccggtggtcgccacgcatccggtgcagttcatgacgccggacgagttcaccgcgcac
gaggcgcgcgtctgtatcgccgagggcgatctgctcgccaacccgcgccgcaccaggcgt
ttcacgaccgaccaatacttcaagacgcaggacgagatgtgcgcgctgttcgccgacatc
ccgtccgcgctggccaacacggtgcagatcgcgcagcgctgcaacctgacgttggaactg
ggcaagcccaaactgccgctgttcccgacgcccgacggcatgtcgctggacgactacctt
gtccagctcgccaaggaaggcctcgagaaacgcatggaagtgctgttccccgacgaggcg
gtgcgcgaggccaagcggcccgagtactacgcgcggctggagttcgagaccggcaccatc
atcaagatgggcttcccgggctacttcctgatcgtggcggacttcatcaactgggccaag
aacaacggcgtgccggtggggccgggccggggctcgggcgcgggctcgctggtggcgtac
gcgctgggcatcaccgacctggacccgctcaagtacaacctgctgttcgagcgcttcctg
aacccggaacgggtgtcgatgcccgacttcgacatcgacttctgccagcacggccgcgac
cgcgtcatccactacgtgaaggagaagtacggcaaggacgccgtctcgcagatcgccacc
ttcggcaccatggccgccaaggccgcggtgcgcgacgtgggccgcgtgctggatctcggc
tacaacttcgtcgacggcgtggccaagctgatcccgttcaagccgggcaagctcgtcacg
ctggaagaggccaagaaggaagagccgctgctggccgagcgcgaggccaatgaagaagag
gtcaagcaactgctcgaactcgcccagcgcgtcgaaggcatgacccgcaacgtcggcatg
cacgcgggcggggtgctgatcgcgccgggcaagctgaccgatttctgtccgctctacacc
cagggcggcgaggatgccggcgtcgtcagccagtacgacaaggacgacgtggaagccgtc
ggcctggtgaagttcgactttctgggcctgaccacgctgaccatcctggactgggccgag
cgctacatccgcatgctcgatccgtccaaggcggactggaactgcagccacattccgctg
accgacaaggcggcgttcgacatcctcaagacggccaacacggtcgccgtgttccagctg
gaaagccgcggcatgcagggcatgctcaaggacgccaagcccgaccgcttcgaggacatc
atcgccctggtggcgctgtaccgtccgggcccgatggacctgatccccagcttctgcgcc
cgcaagcacggccgcgagaaggtggagtaccccgacccgcgcgtcgagccggtgctcaag
gagacctacggcatcatggtctaccaggagcaggtgatgcagatggcgcagatcgtgggc
ggctactcgctcggcggcgccgacctgctgcgccgcgcgatgggcaagaagaaggccgaa
gagatggccgagcaccgcgagctgttccgtggcggcgcggccaaggacggcctgtccacc
gagaaggccgacgagatcttcgacctgatggagaagttcgcgggctacggcttcaacaag
tcgcacgcggcggcgtatgcgctgctggcgtactacaccgcgtggctcaaggcgcatcac
ccggccgaattcatggcagccaacatgtcgctcgccatggacgacaccgacaaggtgaag
atcctctacgacgacgcccgcggcaagaacgccctggcggtgctgccgcccgacatcaac
gccagccagtaccgcttcacgcccaccgacgccaagaccatccgctacggcctgggcggc
gtgaagggcagcgggcagggcgccatcgaagacatcctgcgtgcgcgcgaggacggcccg
ttcaaggacctgttcgacttctgcgagcgcgtcgatcgccgccaggtcaaccgccgtacc
atcgaggcgctggtgcgtgccggcgccttcgacagcctgaacgccaatcgcgcgcaactg
ctggtctcgatcgggctggcgatggaggcggcggagcagaaggcggcggcggccaaccag
gtctcgctgttcgacctgatgggcagcgacgacgctgagcagcatcgcccggagttgctc
gacgaggcgccctggagcaccaagcgcaagctgcaggaagagaagcaggcgctgggcttc
tacctgtcgggccacctcttcgacgagtgccgcgacgaggtccgccgctttgcccgcacg
acgctcgccgacctcgcccgcgaggtcaacggcaatggcaataatggcggcggctacggc
agccgcgacgcgcgcaacaagaccgtggccggcgtgatcgtcggcctgcgcacgcagatg
acccagcgcggcaagatgatcgtcgtcatgctcgatgacggctcgcagagcgaggccacc
gaggtgacggtcttcaacgagctgttcgatgccaatcgcgccctgttcaaggaagacgaa
gtgctgatcgtgcagggcaacgcgcggcacgacaccttcaccggcggggtgcggatgacg
gccgaagccgtgctggacctgacccaggcgcgcgcgcgctatgccgacgcgatcgggctg
acgttccgcgacaacgcctcggccgtgcggctgcgcgagctgctgacgccgcacctggcg
acccaggtgcccggcgtgcgcgtgcgcatcagctatgccgccaacggcgcgcgctgcgaa
gccgtgctcggcgagcaatggcaggtgacgccatccgacgaggtgctggccagcttccgc
tcggcgctgtcgaacgagaacgtccacatgatctacggctga
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