Ralstonia solanacearum CMR15: CMR15_20157
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Entry
CMR15_20157 CDS
T02725
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rsm
Ralstonia solanacearum CMR15
Pathway
rsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMR15_20157 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsm03019
]
CMR15_20157 (rne)
03009 Ribosome biogenesis [BR:
rsm03009
]
CMR15_20157 (rne)
Enzymes [BR:
rsm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CMR15_20157 (rne)
Messenger RNA biogenesis [BR:
rsm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CMR15_20157 (rne)
Ribosome biogenesis [BR:
rsm03009
]
Prokaryotic type
rRNA processing factors
CMR15_20157 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CBJ38202
LinkDB
All DBs
Position
complement(2114179..2117268)
Genome browser
AA seq
1029 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAYFKNGVDVRTARIQDALAEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLQVPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWKAVDGAAVENRAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQAR
AFMSVVMPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAALHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLDDNKASYKMAEEAAKELEADTAYSTRKETVKPRQEAAVKGITPEQPA
PVSVPRAERPARAEATPAAQQAPAPVPAQGGFVSWLKSLFGGKPAEPVVTVPVETPKRAE
DGNRRDRGNRQDRGGRTGQRGERGERGERQGQQQAGRDGQRQGQGRDGGRNEAREGQAQR
EGQREGQRGGRDRNRQPAETAERETVEARQPQQGQEAREGQGRRERSQERRERAPREGRE
GRENREGREGREPREGREPRESRDNREGRERDTQQAKEGASAATTAAVEGLIDPTAAAQV
PQTLLDTTVPAEAITAEGAAPDVEGSGEGEERRRRGRRGRNRYRRDREGAEGVRTEGESE
SEGEDETAAGEPAVETPPAVEAAQPAAPVQHETVVAPVQPVEAPAPVETAAPVVHVQEPV
QAAEAVTPAPTTQPAAQPAEPVAAVVAATPPVETVADTIVTAVAEVPAPVASTVAEAPAL
PIGTLQAVVADAGMMWVHTDAQKLQAAKEDAARTVTPPRAPRERKPLPPIQQGPMVLVET
SRPTDGADQ
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacgcagcaagaagaattgcgcgtcgccattgtcgat
ggccagaaactgatcgacatcgacatcgagaccgccgggcgcgaacagcgcaaaggcaac
atctacaagggtgtcatcacccgcatcgaaccgtcgctggaagcctgcttcgtcaattac
ggcgaagagcggcacggtttcctccccttcaaggaagtcgcccgcgcctacttcaagaac
ggcgtggatgtgcgcaccgcccgcatccaggacgcgctggccgaaggccaggaactgatc
gtccaggtggaaaaggaagagcgtggcaacaagggcgcggccctgaccaccttcatctcg
ctggccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgaagaccgtcaggaactgcgcgaaaccatggcgcagctgcaggttccg
gaaggcatgagcatcattgcccgcaccgccggcatcggccgctcggccgaagagctgcag
tgggacctgaactacctgatgcagctgtggaaggcggtcgacggcgccgcggtcgagaac
agggcgccgttgctgatctatctcgaatcgagcctggtgatccgcgccatccgcgactac
ttccagccggacatcggtgagatcctgatcgataccgacgatatctacgatcaggcccgc
gccttcatgagcgtggtgatgcccgacaacatgaatcgggtgaagaagtaccgcgacgat
gttccgctgttctcgcgcttccagatcgaacaccagatcgaatcggcctattcgcgcatg
gtgatgctgccctccggcggcgccatcgtgatcgaccataccgaagcgctggtcgccgtc
gacgtgaactcggcgcgcgccaccaagggcgctgacatcgaggaaaccgcgctgcgcacc
aacctcgaagcggccgatgagatcgcccgccagttgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggagtcgagcaaggcccagaaggatgtggagacccgc
ctgaaagacgcgctgcgccatgaccgcgcccgcgtgcagatgggcaagatcagccgcttc
ggcctgatggagctgtcgcgccagcgcctgcgtccgtcgctgtccgagggctcgcacgtt
acttgcccgcgctgcaacggcacgggccatatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacacggccgcgctccattgccag
gtgccggtggaagtggctgcgttcctgctcaacgagaagcgcccggacatcaacctgatc
gagacgcgcttcaaggtcaatgtgctgctgatcccgaacaagcacctggaaacgccgcac
tacaagctcgagcgcctgcgtcacgacgatccgcgcctggacgacaacaaggccagctac
aagatggccgaggaagccgccaaggaactggaagccgacaccgcctacagcacccgcaag
gaaacggtcaagccgcgccaggaagcggcggtcaagggcatcacgccggaacagccggca
ccggtgtcggtgccgcgcgccgagcgaccggcccgcgccgaggcgactccggccgcccag
caggccccggccccggtgcccgcacagggcgggttcgtgtcgtggctgaagtcgctgttt
ggcggcaagccggccgagccggtggtcaccgtgcccgtcgagacgcccaagcgcgctgaa
gacggcaaccgccgcgaccgtggcaaccgccaggaccgcggcggccgcaccggccagcgc
ggggaacgcggcgagcgtggcgaacgccagggccagcaacaagccggccgcgacggccag
cgtcaaggccaaggccgcgacggcggccgcaacgaagcccgcgagggccaggcccagcgt
gaaggtcaacgcgaaggtcagcgtggcggccgcgaccgcaaccgtcagccggccgaaacc
gccgagcgcgaaacggtcgaggcacgccagccgcagcagggccaggaagcacgcgaaggc
cagggccgccgcgaacgcagccaggaacgccgcgagcgcgcaccgcgcgaaggccgggaa
ggtcgtgaaaaccgcgaaggccgcgagggccgtgaaccgcgtgagggccgtgaaccgcgc
gaaagccgcgacaaccgtgaaggccgcgagcgcgacacgcagcaggccaaggaaggcgcc
agcgccgcaaccacggccgcagtggaaggcctgatcgatccgaccgcagccgcccaggtt
ccgcaaacactgctggacaccaccgtgcctgccgaggcaatcactgccgagggtgcagca
ccggacgtggaaggcagtggcgaaggcgaagagcgtcgtcgccgcggccgccgtggccgc
aatcgctatcgccgtgaccgtgagggcgcggaaggcgtgcgcaccgaaggcgagagcgaa
agtgagggcgaggacgagaccgcagccggcgagccggcagtggagacccctcctgcggtg
gaagccgctcagccggccgccccggtgcagcacgaaaccgtggtagcgccggtgcagccg
gtggaagcgccggcaccggttgaaaccgctgcgccggtcgtgcacgtgcaggagccggtg
caggccgccgaggctgtgacgcctgccccgacgacgcagcctgccgcgcaaccggccgag
ccggtcgctgcggtggtggcagcaacgcccccggtggaaacggtcgcggacaccatcgtg
acagccgttgccgaagtgccggcaccggtggccagcacggtggccgaggctccggcgctg
ccgatcggcacgctgcaggccgtggtggccgatgccggcatgatgtgggtccacactgac
gcacagaagctgcaggcagcgaaggaagatgccgcccgcaccgtcacgccgccgcgtgcg
ccgcgcgaacgcaagccgctgccgccgatccagcagggaccgatggtcctggtcgaaacc
agccgtccgacggacggcgccgaccagtaa
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