Ralstonia solanacearum CMR15: CMR15_30362
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Entry
CMR15_30362 CDS
T02725
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase hydrolase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rsm
Ralstonia solanacearum CMR15
Pathway
rsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMR15_30362 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsm03019
]
CMR15_30362 (rhlE)
Enzymes [BR:
rsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CMR15_30362 (rhlE)
Messenger RNA biogenesis [BR:
rsm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CMR15_30362 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
UTP25_NTPase-like
HI1480
Motif
Other DBs
NCBI-ProteinID:
CBJ39113
LinkDB
All DBs
Position
complement(3017019..3018665)
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AA seq
548 aa
AA seq
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MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL
HRLSAVQPNKVQTPNGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI
NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN
ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL
LAKLVSDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGT
LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG
LLRDIERLIKRELPRTVLSGFEPDPTIAPEPIPNGRNSARAPRQGGGGRGQQPRQAAGNA
APREPRAPREPRRESGASGQGQGHGQGQGQGRNGGSRQRQAQGQRDGQAAPKPRGGQGSG
NGNGNGNGQSHARGQRQGNGQGNGQGGQRRASSTQAAQPAKKVAQPAPKQPFNGLFAKAA
ALLGGRKA
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttccgaactcggcttgtcagacaagctggtacgcgccgttgccgaactcggc
tacgcagaacccaccccgattcaacgccaggccatccccgcgattctcaagggcggtgac
ctgctcgccggtgcacagaccggcaccggcaagaccgccggcttcacattgccgctgctg
catcgcctgtccgccgtgcagcccaacaaggtgcagacgcccaacggcatgcgctatccc
attcgtgcgctggtgctcacacccacgcgcgaactcgccgcgcaggtcgaagagagcgtg
cgcgcctacggcaagtacttgccgctgaagtcgatggtgatgttcggcggcgtcggcatc
aatccgcagatcgatgcgctcaagcgcggcgtcgatatcgtcgtggccacgccgggccgt
ctgctggaccacgtcggccagcgcaccatcgatctctcgcacatcgaactgctggtgctg
gacgaagccgaccgcatgctggacatgggcttcatccacgacatccgcaagatcctcaac
atcctgccgcccaagcgccagaacctgctgttctcggcgacgttctcggacgacatccgc
gccctggccgaccgtctgctggatcagcccgcgctgatcgaagtcgcgcgccgcaacacc
accgccgagacggtcgaacagcgcatctacccggtcgaccgcgaacgcaagcgcgaactg
ctggccaagctcgtgagcgacaacgactggcaccaggtgctggtcttcacgcgcaccaag
cacggcgccaaccgcctggccgagcagctcacgcgcgacggcatcccggcgctggccatc
catggcaacaagagccagtcggcgcgcacgcgggcgctgtcggagttcaaggccgggacg
ctgcgcgtgctggtcgccaccgacatcgccgcgcgcggcatcgatatcgaccagctgccg
cacgtggtcaacttcgacctgcccaacgtgccggaagactatgtgcaccgcatcggccgc
accggccgcgcgggcgcgcagggcgaggcgatctcgctggtgtgcgtggacgagcatggc
ctgctgcgcgacatcgagcgcctgatcaagcgcgagctgccgcgcaccgttctgtcgggc
ttcgagccggacccgaccatcgcgccggagccgattccgaacggccgcaacagcgcccgt
gcgccgcgccagggcggcggcggccgtggccagcaaccgcgccaggccgcgggcaacgcc
gcgccgcgcgagccccgtgcaccgcgcgagccgcgccgcgagtcgggcgccagcggtcag
ggtcaagggcacggccagggtcagggccaaggccgcaatggcggcagccgccagcgtcag
gcacaaggccagcgcgatggccaggccgcgccgaagccgcgcggcggtcagggcagcggt
aacggcaacggcaacggcaacggtcaatcgcatgcgcgcggccagcgccagggcaacggc
caaggcaacgggcagggcggccagcgccgtgcgtccagcacgcaagccgcgcagccggcc
aagaaggtggcgcagcccgcacccaagcagccgttcaacggcctgtttgccaaggcagcg
gcgctgctcggcggtcgcaaggcctga
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