Ralstonia pseudosolanacearum GMI1000: RSc0222
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Entry
RSc0222 CDS
T00071
Symbol
rtcR
Name
(GenBank) probable sigma-54 interacting transcription regulator protein
KO
K14414
transcriptional regulatory protein RtcR
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rso03000
]
RSc0222 (rtcR)
Transcription factors [BR:
rso03000
]
Prokaryotic type
Other transcription factors
Others
RSc0222 (rtcR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA
AAA_16
AAA_5
Mg_chelatase
AAA_22
ATPase_2
AAA_30
AAA_19
NACHT
MCM
AAA_33
TniB
AAA_7
AAA_14
BrxC_BrxD
DUF6213
AAA_2
T2SSE
Motif
Other DBs
NCBI-ProteinID:
CAD13750
UniProt:
Q8Y2W0
LinkDB
All DBs
Position
complement(243896..245503)
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AA seq
535 aa
AA seq
DB search
MQKTVAIGFVGTVLDYAGKGNQRWERWRPSVGLCQQEDLVIHRLELLHDARSRGLFERLR
DDIAAVSPETEVRSVEIALRDPWDFEEVYGMLHDFARGYAFDTDAEDYLIHITTGTHVAQ
ICWFLLAEARYLPARLVQTSPPRKKAPGNIAGSYALIDLDLSRYDRIATRFAREREDTVS
RLKSGIATRNPAFNRMIEQIERVASRSRSPMLLFGPTGAGKSFLARRVYEMKKARHQLSG
RFVEVNCATLRGDSAMSALFGHVKGAFTGAQTDRAGLLRSADGGLLFLDEIGELGLDEQA
MLLKAIEEKRFLPFGSDREAQSDFQLIAGTVRDLRQWVAEGRFREDLFARINLWTFDLPG
LAQRPEDIEPNLDYELVRFAREHGEQVRFHTEARRAYLRFVASPQARWSGNFRELSASVT
RLATLAEGGRITEAGVEAEIGRLRRAWSGAEAPAGDDTLAGLLGDGAAALDRFDRMQLES
VVRICRESASLSDAGRRLFDVSRLEKAKVNDADRLRKYLARFGLDWQQVRGQAAN
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaccgtggccatcggctttgtcggcaccgtgctggactatgccggcaagggc
aaccagcgctgggagcgctggcgcccgtccgtcggactgtgccagcaggaagacctggtc
atccaccggctggaattgctgcacgacgcgcgcagccgtggcctgttcgagcgcctgcgg
gacgacatcgccgccgtctcgccggaaaccgaggtgcgcagcgtcgagatcgcgctgcgc
gatccctgggatttcgaggaggtctacggcatgctgcacgacttcgcccggggctacgca
ttcgacaccgacgccgaggactacctgatccacatcaccacgggcacccacgtcgcgcag
atctgctggttcctgctggccgaggcgcgctatctgccggcccggctggtgcagacctcg
ccgccgcgcaagaaggcgccgggcaacatcgcgggcagctatgccctgatcgatctcgac
ctgtcccgctacgacaggatcgccacgcgcttcgcgcgcgagcgcgaagacacggtgtcg
cggctgaagtccggcattgccacgcgcaaccccgcgttcaaccgcatgatcgagcagatc
gagcgcgtggcatcgcggtcgcgctcgccgatgctgctgttcggcccgaccggcgccggc
aagtcgttcctggcgcggcgcgtgtacgagatgaagaaggcgcgccaccaactgagcggc
cgctttgtcgaggtgaactgcgccacgctgcgcggcgacagcgcgatgtcggcgctgttc
ggccacgtcaagggcgccttcaccggcgcgcagaccgaccgcgccgggctgctacgcagc
gcggacggcggcctgctgttcctggatgagatcggggagctcgggctggacgagcaggcc
atgctactcaaggccatcgaagagaagcgcttcctgccgttcggcagcgaccgcgaggcg
cagagcgatttccagctgatcgcgggcacggtgcgcgacctgcggcaatgggtggccgag
ggacgctttcgcgaagacctgttcgcgcgcatcaacctgtggaccttcgatctgcccggc
ctggcccagcgcccggaagacatcgagcccaacctcgattacgaactggtccgctttgcc
cgcgagcacggcgagcaggtgcgcttccataccgaggcgcggcgcgcttacctgcggttt
gtcgcctcgccccaggcgcgctggagcggcaacttccgcgagctgtcggcgtcggtcacg
cgcctggccacgctggccgaaggcggccgcatcaccgaggccggcgtggaggcggaaatc
ggccggctgcggcgcgcctggtccggcgccgaggcgcccgccggcgacgacaccctcgcc
gggctgctgggtgacggcgcggccgcgctcgatcggttcgaccggatgcagctggagagc
gtcgtccggatctgccgggaatcggcatcgctgtcggatgcggggcggcggctgttcgat
gtgtcgcggctggagaaagccaaggtcaacgatgcggaccggctgcgcaagtacctcgcc
cggttcggcctggactggcagcaggtgcgcggccaggcggcgaactag
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