Ralstonia pseudosolanacearum GMI1000: RSc0224
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Entry
RSc0224 CDS
T00071
Symbol
rtcB
Name
(GenBank) rtcb protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rso03016
]
RSc0224 (rtcB)
Enzymes [BR:
rso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RSc0224 (rtcB)
Transfer RNA biogenesis [BR:
rso03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RSc0224 (rtcB)
Prokaryotic type
tRNA splicing ligases
RSc0224 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
CAD13752
UniProt:
Q8Y2V8
LinkDB
All DBs
Position
246150..247370
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AA seq
406 aa
AA seq
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MSNTSYDTLHVDNGADIKLWTHGVPVEDDARKQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTRGAIIPAAVGVDIGCGMMAARTTLTATDLPDNLHGLRSAIEAAVPHGRTPGAR
DKGAWSTPPATVDAMWAELAEGFQRITDKYPRLRKTNNHKHLGTLGTGNHFIEVCLDEEN
RVWFMLHSGSRGVGNAIGNLFIELAQADMRQHIANLPDRDLAYFEEGSEHFDDYVEAVGW
AQDYARRNRATMMQNVIAAARKVIAKPFAADVEAVNCHHNYVQRETHFGHEVLVTRKGAV
SAQKGQLGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTQAKKRYTVDDQVRATA
HVECRKDADVIDEIPMAYKDIDAVMAAQADLVEIVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcaataccagttacgacaccctccacgtcgacaacggcgccgacatcaagctgtgg
acccacggcgtgccggtggaagacgacgcccgcaagcaactgatgaacacggcgaagatg
cccttcatcttcaagcacctggcggtgatgccggacgtgcacctgggcaaggggtcgacc
atcggcagcgtgatcccgacgcggggcgcgatcatcccggcggccgtcggcgtggatatc
ggctgcggcatgatggccgcgcgcaccacgctcaccgcgaccgacctgccggacaacctg
cacggcctgcgcagcgccatcgaggcggcggtaccgcacggccgtacgcctggcgcgcgc
gacaagggggcctggagcacgccgccggccacggtcgatgcgatgtgggcggaactggcc
gagggcttccagcggatcaccgacaagtatccgcggctcaggaagacgaacaaccacaag
cacctcggaacgctcggtaccggcaaccacttcatcgaggtctgcctggatgaagagaac
cgcgtctggttcatgctgcactccggttcgcgcggcgtgggcaatgcgatcggcaacctg
ttcattgaactggcgcaggccgatatgcggcagcatatcgccaacctgccggaccgcgac
ctggcgtatttcgaggaaggcagcgagcactttgacgactacgtggaggcggtgggctgg
gcgcaggactacgcgcgccgcaaccgcgccacgatgatgcagaacgtgatcgcggccgcg
cgcaaggtgatcgccaagccgttcgcggcggacgtcgaggcggtgaactgccaccacaat
tacgtgcagcgcgagacccacttcggccacgaggtgctggtgacgcgcaagggcgcggtg
tcggcacagaaggggcagctcggcatcattccgggttcgatgggcgccaagagcttcatc
gtgcgcgggctgggcaacgaagaagcgttctgctcgtgcagccacggcgcgggccgcacc
atgagccgcacgcaggccaagaagcgctacacggtggatgaccaggtccgtgccaccgcg
cacgtggagtgccgcaaggatgccgacgtcatcgacgaaatcccgatggcgtacaaggac
atcgacgccgtgatggccgcgcaggcggacctggtggagatcgtccatacgctgcggcag
gtggtgtgcgtgaaggggtag
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