Ralstonia pseudosolanacearum GMI1000: RSc0539
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Entry
RSc0539 CDS
T00071
Symbol
rhlE1
Name
(GenBank) probable atp-dependent rna helicase protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSc0539 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rso03019
]
RSc0539 (rhlE1)
Enzymes [BR:
rso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RSc0539 (rhlE1)
Messenger RNA biogenesis [BR:
rso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSc0539 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
UTP25_NTPase-like
HI1480
TrAA12
Motif
Other DBs
NCBI-ProteinID:
CAD14067
UniProt:
Q8Y1Z8
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All DBs
Position
582836..584458
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AA seq
540 aa
AA seq
DB search
MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL
HRLSAVQPNKVQTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI
NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN
ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL
LAKLVSDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGT
LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG
LLRDIERLIKRELPRTVLAGFEPDPTIAPEPIPNGRNSARAPRQGGGRSQPPRQAAGNAA
PREPRAPREPRRESGASGQGQGQGQGQGRNGGGRQRQAQGQRDGQAAPKPRGGQGSGNGN
GQSHARGQRQGNGQGNGQGGQRRASNTQAAQPTKVAQPAPKQPFNGLFAKAAALLGGRKA
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttccgaactcggcttgtcagacaagctggtacgtgccgttgccgaactcggc
tacgcagaacccaccccgattcaacgccaggccatccccgcgatcctcaagggcggtgac
ctgcttgccggtgcacagaccggcaccggcaagaccgccggcttcacattgccgctgctg
catcgcctgtccgctgtgcagcccaacaaggtgcagacgccccacggcatgcgctatccc
atccgtgcgctggtgctcacacccacgcgcgagctcgccgcgcaggtggaagagagcgtg
cgcgcctacggcaagtacctgccgctgaagtcgatggtgatgttcggcggcgtcggcatc
aatccgcagatcgatgcgctcaagcgcggcgtcgatatcgtcgtggccacgccgggccgt
ctgctggaccacgtcggccagcgcaccatcgatctgtcgcacatcgaactgctggtgctg
gacgaagccgaccgcatgctggacatgggcttcatccacgacatccgcaagatcctcaac
atcctgccgcccaagcgccagaacctgctgttctcggcgacgttctcggatgatattcgc
gcgctggccgaccgcctgctggatcagcccgcgctgatcgaagtcgcgcgccgcaacacc
actgccgagacggtcgaacagcgcatctacccggtcgaccgcgaacgcaagcgcgaactg
ctcgccaagctcgtgagcgacaacgactggcaccaggtgctggtcttcacgcgcaccaag
cacggcgccaaccgcctggccgagcagctcacgcgcgacggcatcccggcgctggccatc
cacggcaacaagagccagtcggcgcgcacgcgggcgctgtcggagttcaaggccgggacg
ctgcgcgtgctggtcgccaccgacatcgccgcacgcggcatcgatatcgaccaactgccg
cacgtggtcaacttcgacctgcccaacgtgccggaagactatgtgcaccgcatcggccgc
accggccgcgcgggcgcgcagggcgaggcgatctcgctggtgtgcgtggacgagcatggc
ctgctgcgcgacatcgagcgcctgatcaagcgcgaactgccgcgcaccgtcctggcgggc
ttcgagccggacccgaccatcgcgccggagccgattccgaacggccgcaacagtgcccgt
gcgccgcgccagggtggcggtcgcagtcagccgccgcgccaggccgcgggcaacgccgcg
ccgcgcgagcctcgtgcgccgcgtgagccgcgccgcgagtcgggcgccagcggtcagggt
caagggcagggtcagggccaaggccgcaatggcggcggccgccagcgtcaggcacaaggc
cagcgcgatggccaagccgcgccgaagccgcgcggcggtcagggcagcggtaacggcaac
ggccaatcgcatgcgcgcggccagcgccagggcaacggccaaggcaacgggcagggcggc
cagcgccgtgcgtccaacacgcaagccgcgcagccgaccaaggtggcgcagcccgcaccc
aagcagccgttcaacggcctgtttgccaaggcagcggcactgctcggcggccgcaaggcc
tga
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