Ralstonia pseudosolanacearum GMI1000: RSc1040
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Entry
RSc1040 CDS
T00071
Symbol
rne
Name
(GenBank) probable ribonuclease e (rnase e) protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSc1040 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rso03019
]
RSc1040 (rne)
03009 Ribosome biogenesis [BR:
rso03009
]
RSc1040 (rne)
Enzymes [BR:
rso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RSc1040 (rne)
Messenger RNA biogenesis [BR:
rso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RSc1040 (rne)
Ribosome biogenesis [BR:
rso03009
]
Prokaryotic type
rRNA processing factors
RSc1040 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAD14742
UniProt:
Q8Y0K3
LinkDB
All DBs
Position
complement(1093031..1096075)
Genome browser
AA seq
1014 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAYFKNGVDVRTARIQDALAEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLQVPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWKAVDGAAVENKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQAR
AFMSVVMPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLDDNKASYKMAEEAAKELEADTAYSTRKEAAKPRQEAAVKGITPEQPA
PVSVPRSERPARAEATPAAPQAAAPVPAQGGFVSWLKSLFGGKPAEPVVAAPVETPKRAE
DGNRRDRGNRQDRGGRTGQRGERGERQGQQQAGRDGQRQGQGRDGGRNEAREGQAQREGQ
REGQRGGRDRNRQPAETAERETVEARQPQQGQEAREGQGRRERSQERRERAPREGREGRE
PREGREPRESRDNREGRERDTQQAKEGASAAAATAVEGLIDPTAAAQVPQTLLDTTVPAE
AITAEVAAPDAEGSGEGEERRRRGRRGRNRYRRDREGAEGVRTEGEGESEGEGETAAGEP
AVETPPAVEAAQPAAPVQHETVAAPVQPVETPAPVETAAPVVQEPVQAAEAVKPAPTLPA
AQPAEPVAAVVAATPPTETAADTIVTALAEVPAPVASTVAKAPALPIGTLQAVVADAGMT
WVHTDEQKLQAAKEDAARTVTPPRVPRERKPLPPIQQGPMVLVETSRPTDGADQ
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacgcagcaagaagaattgcgcgtcgccattgtcgat
ggccagaaactgatcgacatcgacatcgagaccgccgggcgcgaacagcgcaaaggcaac
atctacaagggtgtcatcacccgcatcgaaccgtcgctggaagcctgcttcgtcaattac
ggcgaagagcggcacggtttcctccccttcaaggaagtcgcccgcgcctacttcaagaac
ggcgtggatgtgcgcaccgcccgcatccaggacgcgctggccgaaggccaggaactgatc
gtccaggtggaaaaggaagagcgtggcaacaagggcgcggccctgaccaccttcatctcg
ctggccggccgctatctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgaagaccgtcaggaactgcgcgaaaccatggcgcagctgcaggttccg
gaaggcatgagcatcattgcccgcaccgccggcatcggccgctcggccgaagagctgcag
tgggacctgaactacctgatgcagctgtggaaggcggtcgacggcgccgcggtcgagaac
aaggcgccgctgctgatctatctcgaatcgagcctggtgatccgcgccatccgcgactac
ttccagccggacatcggtgagatcctgatcgataccgacgatatctatgatcaggcccgc
gccttcatgagcgtggtgatgcccgacaacatgaatcgggtgaagaagtaccgcgacgac
gttccgctgttctcgcgcttccagatcgaacaccagatcgaatcggcgtattcgcgcatg
gtgatgctgccgtccggcggcgccatcgtgatcgaccataccgaagcgctggtcgccgtc
gacgtgaactcggcgcgtgccaccaagggcgccgacatcgaggaaaccgcgctgcgtacc
aacctcgaagcagccgatgagattgcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggagtcgagcaaggcccagaaggacgtggagacccgc
ctgaaagacgcgctgcgccatgaccgcgcccgcgtgcagatgggcaagatcagccgcttc
ggcctgatggagctgtcgcgccagcgcctgcgtccgtcgctgtccgagggctcgcacgtt
acctgcccgcgctgcaacggcacgggccatatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacacggccgcgatccactgccag
gtgccggtggaagtggctgcgttcctgctcaacgagaagcgcccggacatcaacctgatc
gagacgcgcttcaaggtcaatgtgctgctgatcccgaacaagcacctggaaacgccgcac
tacaagctcgagcgcctgcgtcacgacgatccgcgcctggacgacaacaaggccagctac
aagatggccgaggaagccgccaaggaactggaggccgacaccgcctacagcacccgcaag
gaagcggccaaaccgcgccaggaagcggcggtcaagggcatcacgccggaacagccggcg
ccggtgtcggtgccgcgttccgagcggccggcccgcgccgaggcgactccggccgccccg
caggccgcggccccggtgcccgcacagggcgggttcgtgtcgtggctgaagtcgctgttt
ggcggcaagccggccgagccggtggtcgccgcgcccgtcgagacgcccaagcgcgctgaa
gacggcaaccgccgcgaccgcggcaaccgccaggaccgcggcggccgcaccggccagcgc
ggggagcgtggtgaacgccagggccagcaacaagccggccgcgacggccagcgtcagggc
caaggccgcgacggcggccgcaacgaagcccgcgagggccaggcccagcgtgaaggtcaa
cgcgaaggccagcgcggcggccgcgaccgcaaccgtcagccggcagaaaccgccgagcgc
gaaacggtcgaggcacgtcagccgcagcagggccaggaagcacgcgaaggccagggccgc
cgcgaacgcagccaggaacgccgcgagcgcgcaccgcgcgaaggccgcgagggccgtgaa
ccgcgtgagggccgcgagccgcgcgaaagccgcgacaaccgtgaaggccgcgagcgcgac
acgcagcaggccaaggaaggtgccagcgccgcagccgcaactgcggtggaaggcctgatc
gatccgaccgcagccgcccaggtcccgcaaacgctgctggacaccaccgtgcctgccgaa
gcaatcactgccgaggttgcagcaccggacgcggaaggcagcggtgaaggcgaagagcgc
cgtcgccgcggccgccgtggccgcaatcgctatcgccgtgaccgtgagggcgcggaaggc
gtgcgcaccgaaggcgagggcgaaagtgagggcgagggcgagaccgcagccggcgagccg
gcagtggagaccccgcccgcggtggaagccgcacagcctgcagccccggtgcagcacgaa
accgtggcagcgccggtgcagccggtggaaacgccggcaccggtcgaaaccgctgcgccg
gtcgtgcaggaaccggtgcaggccgccgaggctgtgaagcctgccccgacgctgccggcc
gcgcagccggccgagccggtcgctgcggtggtggcagcaacgcccccgacggaaacggcc
gcggacaccatcgtgacggcccttgccgaagtgccggcaccggtggccagcacggtggcc
aaggctccggcgctgccgatcggcacgctgcaggccgtggtggccgatgccggcatgacg
tgggtccacaccgacgagcagaagctgcaggcagcgaaggaagacgccgcccgcaccgtc
acgccgccgcgcgtgccgcgcgagcgcaagccgctgccgccgatccagcaggggccgatg
gtcctggtcgaaaccagccgtccgacggacggcgccgaccagtaa
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