Ralstonia pseudosolanacearum GMI1000: RSc1187
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Entry
RSc1187 CDS
T00071
Symbol
rho
Name
(GenBank) probable transcription termination factor rho (helicase) protein
KO
K03628
transcription termination factor Rho
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSc1187 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rso03021
]
RSc1187 (rho)
03019 Messenger RNA biogenesis [BR:
rso03019
]
RSc1187 (rho)
Transcription machinery [BR:
rso03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RSc1187 (rho)
Messenger RNA biogenesis [BR:
rso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RSc1187 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
AAA_19
DUF7125
Phostensin_N
Motif
Other DBs
NCBI-ProteinID:
CAD14889
UniProt:
Q8Y057
LinkDB
All DBs
Position
complement(1251086..1252348)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLTELKSLHVSQLLEMAGQLEIDNAQRMRKQELMFAILKKKAKQGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
AQPPEAVKNRIMFENLTPLHPNRTLTLERDIKAEENITGRIIDMIAPIGRGQRALLVASP
KSGKTVMLQHIAHAITANHPEAELFVLLIDERPEEVTEMQRTVRGEVVASTFDEPAVRHV
QVAEMVIEKAKRLVELKKDVVIVLDSITRLARAYNTVVPTSGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL
NKSGTRREELLIKPDILQKVWILRKFIHDMDEVEAMEFLLDKLKSTKNNAEFFDMMRRGS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgacagaactgaaatccctgcatgtgtcccaattgctggaaatggcgggacag
ctggagatcgacaacgcgcagcgcatgcgcaaacaggagctgatgtttgccatcctgaaa
aagaaagcgaaacagggggaaacgattttcggcgacggcacgctggaagtgctgcccgac
ggcttcggctttctgcgctcgccggaaacgtcgtacctggcgagcacggacgacatctac
atcagcccgtcgcagatccgccgcttcaacctgcacaccggcgacaccatcgaaggcgaa
gtccgcacgcccaaggacggcgagcgttacttcgcgctggtgaaggtcgacaaggtcaac
gcccagcctcctgaagcggtcaagaaccgcatcatgttcgagaacctgacgccgctgcat
ccgaaccgcacgctcacgctcgaacgcgacatcaaggccgaggagaacatcaccggccgc
atcatcgacatgatcgccccgatcggccgcggccagcgcgcgctgctggtggcctcgccc
aagtcgggcaagaccgtgatgctgcagcacatcgcgcatgccatcacggccaaccatccg
gaagccgaactgttcgtgctgctgatcgacgagcgtccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtggcctccaccttcgacgagccggccgtgcgccacgtg
caggtcgcggaaatggtgatcgagaaggccaagcgcctggttgaactgaagaaggacgtg
gtgatcgtgctggactcgatcacgcgcctggcccgcgcctacaacaccgtggtgccgacc
tccggcaaggtgctgaccggcggcgtggacgccaacgccctgcagcgtccgaagcgcttc
ttcggtgccgcgcgcaatctggaggaaggcggttcgctgaccatcatcggcacggcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagaattcaagggcaccggcaac
atggaagtgcacctggagcgccgcctggccgagaagcgcgtctaccccgccatcaacctg
aacaagtcgggcacgcgccgcgaagagctgctgatcaagccggacatcctgcagaaggtg
tggatcctgcgcaagttcatccacgatatggacgaggtcgaggcgatggaattcctgctc
gacaagctcaagtccacgaagaacaacgcggagttcttcgacatgatgcgacgtggcagc
tga
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