Ralstonia pseudosolanacearum GMI1000: RSc1603
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Entry
RSc1603 CDS
T00071
Symbol
lpdA
Name
(GenBank) probable dihydrolipoamide dehydrogenase (e3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) protein
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso00010
Glycolysis / Gluconeogenesis
rso00020
Citrate cycle (TCA cycle)
rso00260
Glycine, serine and threonine metabolism
rso00280
Valine, leucine and isoleucine degradation
rso00310
Lysine degradation
rso00380
Tryptophan metabolism
rso00620
Pyruvate metabolism
rso00630
Glyoxylate and dicarboxylate metabolism
rso00640
Propanoate metabolism
rso00670
One carbon pool by folate
rso00785
Lipoic acid metabolism
rso01100
Metabolic pathways
rso01110
Biosynthesis of secondary metabolites
rso01120
Microbial metabolism in diverse environments
rso01200
Carbon metabolism
rso01210
2-Oxocarboxylic acid metabolism
rso01240
Biosynthesis of cofactors
Module
rso_M00009
Citrate cycle (TCA cycle, Krebs cycle)
rso_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
rso_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
rso_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
rso_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
RSc1603 (lpdA)
00020 Citrate cycle (TCA cycle)
RSc1603 (lpdA)
00620 Pyruvate metabolism
RSc1603 (lpdA)
00630 Glyoxylate and dicarboxylate metabolism
RSc1603 (lpdA)
00640 Propanoate metabolism
RSc1603 (lpdA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
RSc1603 (lpdA)
00280 Valine, leucine and isoleucine degradation
RSc1603 (lpdA)
00310 Lysine degradation
RSc1603 (lpdA)
00380 Tryptophan metabolism
RSc1603 (lpdA)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
RSc1603 (lpdA)
00670 One carbon pool by folate
RSc1603 (lpdA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rso04147
]
RSc1603 (lpdA)
Enzymes [BR:
rso01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
RSc1603 (lpdA)
Exosome [BR:
rso04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
RSc1603 (lpdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Biotin_lipoyl
Pyr_redox
GIDA
FAD_oxidored
Biotin_lipoyl_2
AlaDh_PNT_C
NAD_binding_8
Pyr_redox_3
FAD_binding_2
GCV_H
DEC-1_N
Thi4
FAD_binding_3
Motif
Other DBs
NCBI-ProteinID:
CAD15305
UniProt:
Q8XZ03
LinkDB
All DBs
Position
1722543..1724327
Genome browser
AA seq
594 aa
AA seq
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MSVVEIKVPDIGDYKDVDVIEVMVKAGDVVAVDQSLITLETDKATMDVPADVAGRIVEVK
IKVGDKASQGTVIATVEAGAAAAAPAPTQAPAPAAAPAAAPAASAPAPQAAKHGGSADLE
CDMLVLGSGPGGYSAAFRSADLGMNTVLVERFGTLGGVCLNVGCIPSKALLHTAAIMDEV
KAMASHGIVYSEPKVDLDQLRKHKETVVGKLTGGLAGMAKSRKVQVVRGVGTFLDPNHLE
VQLTSGEGKQATGEKKVIRFAKAIIAAGSESVKLPFIPEDPRIVDSTGALELRQVPGKML
VIGGGIIGLEMATVYSTLGARIDVVEMLDSLMNGADRDLVKVWDKMNKSRFDKVMLKTKT
VGVEAKPDGIYVRFEGEQAPAEPQRYDMVLVAVGRSPNGKRIGAEKAGVAVTDRGFIDVD
KQQRTNVPHIYAIGDIVGQPMLAHKAVHEAHVAAEAAHGEKAYFDAKQIPSVAFTDPEVA
WAGLTEDQCKAQGIKYGKGVFPWAASGRAIANGRDEGFTKVIFDEETHRIIGGGIVGTHA
GDLISEICLAIEMGADAIDIGKTIHPHPTLGESVGMAAEIYEGVCTDVPPARKR
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggtggaaatcaaggtgccggacatcggcgactacaaggacgtggacgtcatc
gaagtgatggtgaaggcgggcgacgtcgtcgccgtcgaccagtcgctgatcacgctggag
accgacaaggcgaccatggacgtgccggccgacgtggcaggcaggatcgtcgaggtcaag
attaaggtgggcgacaaggccagccagggcaccgtcatcgccacggtggaagccggtgcc
gcggccgcggcgcccgcgcccacgcaagccccggctccggcggccgcacccgctgccgct
ccggccgcctcggcgcccgcgccgcaggccgcgaagcacggcggcagcgccgatctcgaa
tgcgacatgctcgtcctgggctccggcccgggcggctactcggccgctttccgcagcgcc
gacctcggcatgaacacggtgctggtcgaacgcttcggcacgctgggcggcgtctgcctg
aatgtggggtgcatcccgtccaaggcgctgctgcacacggcggccatcatggacgaagtc
aaggcgatggccagccacggcatcgtctacagcgagccgaaggtcgatctggaccaactg
cgcaagcacaaggaaaccgtggtcggcaagctgaccggcggcctggccggcatggccaag
tcgcgcaaggtgcaagtcgtgcgcggcgtgggcacgttcctcgacccgaaccatctggaa
gttcagctgaccagcggtgaaggcaagcaggccaccggcgagaagaaggtcatccgcttc
gccaaggccatcatcgccgccggcagcgagtcggtgaagctgccgttcattccggaagac
ccgcgcatcgtcgactccaccggcgcgctggagctgcgccaggtgccgggcaagatgctg
gtcatcggcggcggcatcatcggcctggaaatggcgacggtttacagcacgctgggtgcg
cgcatcgacgtggtggagatgctcgatagcctgatgaacggcgccgaccgcgatctcgtc
aaggtgtgggacaagatgaacaagtcccgcttcgacaaggtcatgctcaagaccaagacg
gtgggtgtcgaggccaagccggacggcatttacgtcaggttcgagggcgagcaggcgccc
gccgagccgcagcgctatgacatggtgctggtggccgtgggccgcagcccgaacggcaag
cgcatcggcgcggaaaaggccggcgtggccgtgaccgaccgcggcttcatcgacgtggac
aagcagcagcgcaccaacgtgccgcatatctatgcgatcggcgacatcgtcgggcagccg
atgctggcgcacaaggcggtgcacgaggcccacgtcgcggcggaggccgcgcatggcgag
aaggcctacttcgatgccaagcagattccgtcggtggccttcaccgatccggaagtggcc
tgggccggcctgaccgaagaccagtgcaaggcgcagggcatcaagtacggcaagggcgtg
ttcccgtgggccgcttcgggccgcgccatcgccaacggccgcgatgagggcttcaccaag
gtcatcttcgacgaagagacgcaccggattatcggcggcggcatcgtcggcacgcatgca
ggcgacctgatcagcgagatctgcttggcgatcgagatgggcgcggacgcgatcgacatc
ggcaagaccatccacccgcatccgacgctgggcgagtcggttggcatggcggcggaaatc
tacgagggcgtctgcacggacgtgccgccggctcgcaagcgctga
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