Ralstonia pseudosolanacearum GMI1000: RSc2205
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Entry
RSc2205 CDS
T00071
Symbol
dnaE1
Name
(GenBank) probable dna polymerase III (alpha chain) protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso03030
DNA replication
rso03430
Mismatch repair
rso03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSc2205 (dnaE1)
03430 Mismatch repair
RSc2205 (dnaE1)
03440 Homologous recombination
RSc2205 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rso03032
]
RSc2205 (dnaE1)
03400 DNA repair and recombination proteins [BR:
rso03400
]
RSc2205 (dnaE1)
Enzymes [BR:
rso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RSc2205 (dnaE1)
DNA replication proteins [BR:
rso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RSc2205 (dnaE1)
DNA repair and recombination proteins [BR:
rso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RSc2205 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CAD15912
UniProt:
Q8XXB1
LinkDB
All DBs
Position
complement(2387018..2390539)
Genome browser
AA seq
1173 aa
AA seq
DB search
MNSPRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGK
GVKPIVGADVWITNHDERDKPSRLLLLVRNKQGYLNLCMLLARAWLSNQHRGRAEVAPEW
FGEPGVEEAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPASFYIELQRA
GNAGTEAYVQQAVKLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGDLLANPRRTRR
FTTDQYFKTQDEMCALFADIPSALANTAQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYL
VHLAKDGLEKRMAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAK
NNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRD
RVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVT
IEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYT
QGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRTLDPSRADWNCSHIPL
TDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCA
RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAE
EMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH
PAEFMAANMSLAMDDTDKVKILYDDARGKNGLAVLPPDINASQYRFTPTDAKTIRYGLGG
VKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNANRAQL
LVSIGLAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLDEAPWSTKRKLQEEKQALGF
YLSGHLFDECRDEVRRFARTTLADLAREVNGNGNNGGGYGSRDARNKTVAGVIVGLRTQM
TQRGKMIVVMLDDGSQSEATEVTVFNELFDANRALFKEDEVLIVQGNARHDTFTGGVRMT
AEAVLDLTQARARYADAIGLTFRDNASAARLRELLTPYLAAQVPGVRVRISYAANGARCE
AVLGEQWQVTPSDEVLASFRSALSTENVYMIYG
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgccgcgcttcgtccatctccgtctccattccgaatattccgtcgtcgacggc
aacgtccgcctggacgaggccgtcaaggccgccgccgccgatggcatgggcgcgctggcg
ctgaccgaccttgccaacgctttcggcctggtgcgcttctacaaggaagcgcgcggcaag
ggcgtcaagcctatcgtcggcgccgacgtgtggatcaccaatcacgacgagcgcgacaag
cccagccgcctgctgctgctggtgcgcaacaagcagggctacctgaacctgtgcatgctg
ctggcgcgcgcctggctgtccaaccagcatcgcggccgcgcggaggtcgcccccgagtgg
ttcggcgagcccggcgtggaagaggcgccgatggccaccggcctgctggcgctgtccggc
gcgatgggcggcgacatcggcatggcgctcgccaacggcaacgaggcgctggcgcgcaag
ctggcgacgcagtggtcgcaggtgttcccggcgtcgttctacatcgagctgcagcgcgcc
gggaacgccggcaccgaggcctacgtccagcaggccgtgaagctggccgcgtcgatgcag
ctgccggtggtcgccacgcatccggtgcagttcatgacgccggacgacttcaccgcgcac
gaggcgcgcgtctgcatcgccgagggcgatctgctcgccaacccgcgccgcaccaggcgt
ttcacgaccgaccaatatttcaagacgcaggacgagatgtgcgcgctgttcgccgacatc
ccgtccgcgctggccaacacggcgcagatcgcgcagcgctgcaacctgacgctggaactg
ggcaagcccaagctgccgctgttccccacgcccgacggcatgtcgctggacgactacctc
gtccacctggccaaggacgggctggagaagcgcatggccgtgctgttccccgacgaggcg
gtgcgcgaggccaagcggcccgagtactacgcgcggctggagttcgagaccggcaccatc
atcaagatgggcttcccgggctacttcctgatcgtggcggacttcatcaactgggccaag
aacaacggcgtgccggtggggccgggccggggctcgggcgcgggctcgctggtggcgtac
gcgctgggcatcaccgacctggacccgctcaagtacaacctgctgttcgagcgcttcctg
aacccggaacgggtgtcgatgcccgacttcgacatcgacttctgccagcacggccgcgac
cgcgtcatccactacgtgaaggagaagtacggcaaggacgccgtctcgcagatcgccacc
ttcggcaccatggccgccaaggccgcggtgcgcgacgtgggccgcgtgctggatctcggc
tacaacttcgtcgacggcgtggccaagctgatcccgttcaagccgggcaagctggtcacc
atcgaggaagccaagaaggaagagccgctgctggccgagcgcgaggccaatgaagaagag
gtcaagcagctgctcgaactcgcccagcgcgtcgaaggcatgacccgcaacgtcggcatg
cacgcgggcggggtgctgatcgcgccgggcaagctgaccgatttctgcccgctctacacc
cagggcggcgaggatgccggcgtcgtcagccagtacgacaaggacgacgtggaagccgtc
ggcctggtgaagttcgacttcctgggcctgaccacgctgaccatcctggactgggccgag
cgctacatccgcacgctcgatccgtccagggcggactggaactgcagccacattccgctg
accgacaaggcggcgttcgacatcctcaagacggccaacacggtcgccgtgttccagctg
gaaagccgcggcatgcagggcatgctcaaggacgccaagcccgaccgcttcgaggacatc
atcgccctggtggcgctgtaccgtccgggcccgatggacctgatccccagcttctgcgcc
cgcaagcacggccgcgagaaggtggagtaccccgacccgcgcgtcgagccggtgctcaag
gagacctacggcatcatggtctaccaggagcaggtgatgcagatggcgcagatcgtgggc
ggctactcgctcggcggcgccgacctgctgcgccgcgcgatgggcaagaagaaggccgaa
gagatggccgagcaccgcgagctgttccgtggcggcgcggccaaggacggtctgtccacc
gagaaggccgacgagatcttcgacctgatggagaagttcgcgggctacggcttcaacaag
tcgcacgcggcggcgtatgcgctgctggcgtactacaccgcgtggctcaaggcgcatcac
ccggccgaattcatggcagccaacatgtcgctcgccatggacgacaccgataaggtgaag
atcctctacgacgacgcccgcggcaagaacggcctggcggtgctgccgcccgacatcaac
gccagccagtaccgcttcacgcccaccgacgccaagaccatccgctatggcctgggcggc
gtgaagggcagcgggcagggtgccatcgaagacatcctgcgcgcgcgcgaggacggcccg
ttcaaggacctgttcgacttctgcgagcgtgtcgaccgccgccaggtcaaccgccgcacc
atcgaggcgctggtgcgcgccggcgccttcgacagcctgaacgccaatcgcgcgcagctg
ctggtctcgatcgggctggcgatggaggcggccgagcagaaggcggcagcggccaaccag
gtctcgctgttcgacctgatgggcagcgacgacgccgagcagcatcgcccggagctgctc
gacgaggcgccctggagcaccaagcgcaagctgcaggaagagaagcaggcgctgggcttc
tatctgtcggggcacctcttcgacgagtgccgcgacgaggtccgccgctttgcccgcacg
acgctcgccgacctcgcccgcgaggtcaacggcaatggcaataatggcggcggctacggc
agccgcgacgcgcgcaacaagaccgtggccggcgtgatcgtcggcctgcgcacgcagatg
acccagcgcggcaagatgatcgtcgtcatgctcgatgatggctcgcagagcgaggccacc
gaggtgacggtcttcaacgagctgttcgacgccaaccgcgcgctgttcaaggaagacgag
gtgctgatcgtgcagggcaacgcgcggcacgacaccttcaccggcggggtgcggatgacg
gccgaggccgtgctggacctgacccaggcgcgcgcgcgctatgccgacgcgatcgggctg
acgttccgcgacaacgcgtcggccgcgcggctgcgcgagctgctgacgccgtacctggcg
gcccaggtgcccggcgtgcgcgtgcgcatcagctatgccgccaacggcgcgcgctgcgaa
gccgtgctcggcgagcaatggcaggtgacgccatcggacgaggtgctggccagcttccgc
tcggcgctgtcgaccgagaacgtctacatgatctacggctga
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integrated database retrieval system
