Ralstonia pseudosolanacearum GMI1000: RSc2235
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Entry
RSc2235 CDS
T00071
Symbol
uvrD
Name
(GenBank) probable dna helicase II protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso03420
Nucleotide excision repair
rso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSc2235 (uvrD)
03430 Mismatch repair
RSc2235 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rso03400
]
RSc2235 (uvrD)
Enzymes [BR:
rso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSc2235 (uvrD)
DNA repair and recombination proteins [BR:
rso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSc2235 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
RSc2235 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CAD15942
UniProt:
Q8XX81
LinkDB
All DBs
Position
complement(2424741..2427230)
Genome browser
AA seq
829 aa
AA seq
DB search
MTGESLELYGLSVAGMGEAGEAAGIISGFRKGSPRMSELLAHLNPEQRAAVTLPDESALI
LAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTNKAAKEMTARLSAMLPINTRGMWI
GTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLSAVKRLLKSLNIDDEKFPPKNVQYFIN
GAKEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVDFSELLLRCYELLRYNDAIRA
HYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEAGVTPNAIFAVGDDDQSIYAFRGANVG
NMVDFEREFRVAHRIKLEQNYRSHGNILDTANHLIAHNTRRLGKNLRTDAGHGEPVRVYP
SATDGQEAGWIVEEIRERIASGTARSEIAILYRSNAQSRVIEHALFSVGIPYKVYGGLRF
FERAEIKHALAYLQLLENPDNDAAFGRVVNFPARGVGARSLEQLQDAAKLYGVSLAASVP
YLTGAAGTKLAAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQGEKEGLDRIENLQ
ELVTAAQAFVAEEGYGVDAIATALPMRHDAMLRIEGGETDSDAVTELVADETPTEMTPLV
AFLTHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFHVVFITGLEEGLFPHENSLLDTDGL
EEERRLMYVAITRARERLYLSFAQSRVLHGQIRYHIRSRFFDELPEATLKWLTPQHTGYS
PTRRAQGGQGMQGDSAWGREWFKRPERGDNEAYTGRPTGGMDTGNTYADTKRAAGTGFRV
GQSVFHNKFGEGVITTLEGEGADARAHIKFSRHGVKVLALGIAKLDPIN
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgacgggcgaaagcctggaattatacggcctgtcggtggccggcatgggcgaagcgggc
gaggcggccggtataatttccggattccgcaaaggctctccccgcatgtccgaactgctc
gctcacctgaaccccgaacaacgcgccgccgtcacgcttcccgacgagtcggcgctgatc
ctggccggggcgggcagcggcaagacgcgcgtgctgaccacccgcatcgcctggctgatc
cagagcgcccgggtgtcgccgtcgggtgtgctggccgtcacctttaccaacaaggcggcc
aaggagatgaccgcccggctgtccgccatgctgccgatcaacacgcgcggcatgtggatc
ggcaccttccacggcctgtgcaaccggctgctgcgcgcgcactaccgcgacgccgggctg
ccgcagaccttccagatcctcgatacgcaagaccagctctcggccgtcaagcgcctgctc
aagtcgctgaacatcgacgacgagaagtttccgccgaagaacgtccagtacttcatcaat
ggcgccaaggaacagggcctgcgcgcaggcgacctggagatcgccaatgagttcgaccgc
cgcatggccgacctgtacgccgcctacgatgcgcagtgccagcgcgaaggcgtggtcgat
ttttcagagctgctgctgcgctgctatgagctgctgcgttacaacgatgcgatccgcgcg
cactaccagcggcgcttcaagcacatcctggtcgacgagttccaggacaccaaccgcctg
caatacgcctggctgaagatcctggccggcctgggcgaggcgggcgtcacgcccaacgcc
atctttgccgtgggcgacgacgaccagagcatctacgccttccgcggcgccaacgtcggc
aacatggtggacttcgagcgcgaattccgtgtcgcgcaccgcatcaagctggagcagaac
taccgttcgcacggcaacatcctggacacggccaaccacctgatcgcccacaacacccgc
cgcctgggcaagaacctgcgcaccgacgccggccacggcgagccggtgcgcgtctacccg
tccgccaccgacgggcaggaggccggctggatcgtcgaagaaatccgcgagcgcatcgcc
agcggcacggcgcgttccgagatcgccatcctgtatcgcagcaacgcgcagtcgcgggtg
atcgagcatgcgttgttctcggtgggtattccctacaaggtgtatggcgggctgcgcttc
ttcgagcgcgccgaaatcaagcacgcgctggcctacctgcagctgctggagaaccctgac
aacgatgccgccttcggccgcgtggtcaacttcccggcgcgcggcgtcggggcgcggtcg
ctggagcagctgcaggatgcggccaagctgtatggcgtgtcgctggcggcgtcggtgccg
tacctgactggcgcggcggggacgaagctggcggcgttcgtgcggctgatcgagcagatg
cgcgccgacacgcgccagatgacgctgcccgagatcgtccagcacgtgatccacgccagc
ggcctcatcacgcattaccagggcgagaaggaaggtctcgaccgcatcgagaacctgcag
gaactggtgaccgccgcccaggccttcgtggccgaggagggctacggcgtcgatgccatc
gccaccgcgctgccgatgcgccacgacgcgatgctgcgcatcgagggcggcgagacggac
agcgatgccgtcaccgagctggtcgccgatgaaacgccgacggagatgaccccgctggtc
gccttcctgacgcatgcctcgctggaggccggcgacaaccaggcccaggccggccaggac
gcggtgcaactgatgaccgtgcacgccgccaaggggttggagttccacgttgtcttcatt
accggcctggaggagggcctgttcccgcacgagaacagcctgctggacaccgacggcctg
gaagaagagcgtcgcctgatgtacgtagccatcacccgggcgcgcgagcgcctgtacctg
tcgtttgcacagagccgcgtgctgcacgggcagatccgctaccacattcgctcgcgcttc
ttcgacgagctgccggaagccacgctgaagtggctgacgccgcagcataccggctacagc
cccacgcgtcgcgcgcagggcgggcagggcatgcagggcgatagcgcctggggccgcgag
tggttcaagcgccccgagcgcggcgacaacgaggcctacaccggccgcccgaccggcggc
atggacaccggcaacacctacgccgacaccaagcgcgcggccggaacgggtttccgcgtc
ggccagtcggtgttccacaacaagttcggggaaggcgtcatcacgacgctggaaggcgag
ggcgccgatgcgcgcgcccacatcaagttcagccgccacggcgtgaaggtgctggcgctg
ggcatcgccaagctggacccgatcaactga
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