Ralstonia pseudosolanacearum GMI1000: RSc3025
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Entry
RSc3025 CDS
T00071
Symbol
recQ
Name
(GenBank) probable atp-dependent dna helicase protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSc3025 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rso03019
]
RSc3025 (recQ)
03400 DNA repair and recombination proteins [BR:
rso03400
]
RSc3025 (recQ)
Enzymes [BR:
rso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSc3025 (recQ)
Messenger RNA biogenesis [BR:
rso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSc3025 (recQ)
DNA repair and recombination proteins [BR:
rso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RSc3025 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
CAD16734
UniProt:
Q8XV07
LinkDB
All DBs
Position
complement(3245533..3247446)
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AA seq
637 aa
AA seq
DB search
MFDSPAIDHALDALPEDTAAATRAVLHDVFGYSAFRGPQADIVAHVADGGDCLVLMPTGG
GKSLCYQIPALVRHRRGQGAGIVVSPLIALMQDQVAALEEAGVRAAYLNSALSGAEAAQV
ERDLAAGRLDLVYVAPERLMTPRFLELLERSRIGLFAIDEAHCVSQWGHDFRPEYIQLSV
LHERFPHVPRIALTATADAVTRDEIVERLALGGARVFLSSFDRPNIRYTIVEKDSARQQL
LRFIRAEHLGEDGCDAGIIYCLSRKKVEETAQWLAEQGLRALPYHAGMDAETRARHQAIF
RKEEGVVMVATIAFGMGIDKPDVRFVAHLDLPKSLEGYYQETGRAGRDGLPANAWMAYGL
ADVVQQRRMIDESDADDVHKRVSTAKLDALLGLCESAGCRRVALLAYFGESSEPCGNCDT
CLSPPQTWDATREAQMALSCVYRVQQASRVSFGAGQLIDILRGNATERIKQWHHETLSTF
GIGNALSERAWRGVFRQLVAQGLLAVDHGGHGALVLTDAARPVLKGAQHVTLRRQAEKVR
AAPASGAKSERRADPAAELSAEAQVRWQALRVWRAQTAREHSVPAYVIFHDATLARIAES
DPASRDALAELPGIGVAKLDRYGQALLDVLAKCRGEV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgttcgattctcccgccattgaccacgcgctcgacgcgttgcccgaagatacggccgcc
gccacgcgcgccgtgctgcacgacgtgttcggctacagcgcgttccgcgggccgcaggcg
gacatcgttgcccacgtcgccgacggcggcgattgcctggtgctgatgcccaccggcggc
ggcaagtcgctctgttatcagattcccgccctggtgcggcaccggcgcggccagggcgcg
ggcatcgtggtctcgccgctgatcgccctgatgcaggaccaggtggccgcgctggaagag
gccggtgtgcgcgccgcctacctcaattccgcgctcagcggcgccgaggccgcgcaggtc
gagcgcgatctggcggccggccggctcgatctcgtctacgtcgcgcccgaacggctgatg
acgccgcgcttcctcgaactgctggagcgctcgcgcatcggcctgttcgccatcgatgag
gcgcattgcgtgtcgcagtgggggcacgatttccggccggagtacatccagctctccgtg
ctgcacgagcgcttcccgcacgtgccgcgcatcgcgctgaccgccaccgccgacgccgtc
acgcgcgacgagatcgtcgagcggctggcgctgggcggcgcccgcgtcttcctctccagc
ttcgaccgccccaacatccgctacaccatcgtcgagaaggacagcgcgcgccagcagctg
ctgcgcttcatccgcgccgagcacctcggcgaagacggctgcgacgccggcatcatctat
tgtctgtcgcgcaagaaggtggaagagaccgcgcagtggctggccgagcagggcctccgc
gcgctgccctaccacgccggcatggacgccgagacgcgcgcccgccaccaggccatcttc
cgtaaggaggagggcgtggtgatggtggcgaccatcgccttcggcatgggcatcgacaag
ccggacgtgcgcttcgtcgcccatctggacttgcccaagagcctggagggctactaccag
gaaaccggccgcgccggccgcgacggcctgcccgccaacgcgtggatggcctacggcctg
gccgatgtggtgcagcagcgccgcatgatcgacgagtccgacgccgacgacgtgcacaag
cgtgtctcgacggccaagctcgatgcgctgctggggctgtgcgagtcggcgggatgccgc
cgcgtggccctgctggcgtatttcggcgagtccagcgagccttgcggcaactgcgacacc
tgcctgagcccgccgcagacctgggacgcgacccgcgaggcgcagatggcgctgtcgtgc
gtgtaccgcgtgcagcaggccagccgcgtgagcttcggcgccggccaactgatcgacatc
ctgcgcggcaacgccaccgagcgcatcaagcaatggcatcacgagacgctgtccactttc
ggcatcggcaacgccctgtcggagcgcgcgtggcgcggcgtgttccgccagctggtggcg
caggggctgctggcggtcgatcacggcggccatggcgccctggtgctgaccgacgccgcg
cgcccggtgctcaagggcgcgcagcatgtgaccttgcggcgccaggcggagaaggtgcgt
gccgcgcccgcgtccggcgccaagtccgagcgtcgcgcggatcccgccgcggagctatcg
gccgaggcccaggtgcgctggcaggcactgcgcgtctggcgggcccagaccgcgcgcgag
cacagcgtgcccgcctatgtgatcttccatgacgccacgctcgcccgcatcgccgaatcc
gatcccgcttcgcgcgacgcgctcgccgagctgcccggcatcggtgtcgccaagctggac
cgttacggccaggccttgctcgacgtgctggccaagtgccggggcgaggtctag
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