Ralstonia pseudosolanacearum GMI1000: RSc3125
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Entry
RSc3125 CDS
T00071
Symbol
sbcB
Name
(GenBank) putative exodeoxyribonucleaseIprotein
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RSc3125 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rso03400
]
RSc3125 (sbcB)
Enzymes [BR:
rso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
RSc3125 (sbcB)
DNA repair and recombination proteins [BR:
rso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RSc3125 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RSc3125 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RSc3125 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
CAD16834
UniProt:
Q8XUR1
LinkDB
All DBs
Position
complement(3369107..3370576)
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AA seq
489 aa
AA seq
DB search
MPASLRCPTRLTVTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPS
NDWLPDPMSCLITGITPQQCRRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRH
LFWRNLIDPYAREWQNTCGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANG
LQHEAAHDALSDVRATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDASRPLLHVSGM
YGVERGCLAVVWPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTT
RLPIKSIHINKSPIVIGNLKTLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYAR
ELEPIEDVDQNLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLFRYRARNF
PDTLTEEEYEQWEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLY
DYAQQILPG
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgccggcatctttgcgatgcccaacccgcctgaccgtgacccacaccttcttctggcac
gactacgaaaccttcggcgccgtgccgcgccgcgatcgcccggcccagttcgccggcatc
cgtaccgacgccgagctcaacgagatcggcgaaccggtcgagctgttctgtcagccgtcc
aacgactggctgcccgacccgatgtcgtgcctgatcaccggcatcacgccgcagcagtgc
cgccggcagggtatccccgagcaccgtttcgcgcaggccatcgagcgcgagctggccacg
cccggcaccatcggcgtcggctataactccatccgcttcgacgatgagatcacgcgccac
ctgttctggcgcaacctgatcgatccgtatgcgcgcgaatggcagaacacgtgcggccga
tgggatctgctcgatgtggtgcgcaccacctgggcgctgcgcccggacggcgtcgaatgg
ccgaagaacggcgacggcaagcccagcttcaagctggagcacctgtcgcaggccaacggc
ctgcagcacgaagccgcacacgatgcgctgtcggatgtgcgggccaccatcgcgctggcc
cggcgggtccgcgccgcgcagccccgcctgttcgatttctgcttcgcgctgcgcaagaag
gagcgcgtgctggccgagatcggcgacgcgtcgcggccgttgctgcacgtctcgggcatg
tacggcgtggagcggggctgcctggcggtagtgtggccgctgggctggcacccgaccaac
aagaacgaactgctggtgtgggacctcgcctgcgatccggccgagctgttcgacctcggc
gttgacaccatccgcgagcgcctgttcacgcgcagcgccgatctgaccgagggcaccacg
cgcttgcccatcaagtcgatccacatcaacaagtcgcccatcgtcatcggcaacctgaag
acgctgcagcccgcgcaggccgagcgctggggcatcgacttcgcggtcatcgagcgtcat
gccggtatcgcccaaggggcgcccgatctgcgcgaaacgtggcgccaggtctacgcccgc
gagctggagccgatcgaagacgtggaccagaatctctacggcggcttcgtcggcaatgac
gaccgccgcacgctcaacgaactgcgcacgctttcgggcgagcagctcgcgcagctgcac
ccggacttcgccgatgcgcgcctgcccgaactgctgttccgctatcgcgcgcgcaatttt
cccgacacgctcacggaagaggagtacgaacagtgggagcagttgcgcgccgagcgcctg
ttcgaggggcgcgagggctacctgaccttcgatgccttcggcgagcggatcgagcagctt
gccgccgaggccgccgagcgtgacgacgcgcgcgcgcagaatgtgctgcaggatctgtac
gactacgctcagcagattctgccgggctga
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