Ralstonia pseudosolanacearum GMI1000: RSc3440
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Entry
RSc3440 CDS
T00071
Symbol
gyrB
Name
(GenBank) probable dna gyrase (subunit b) protein
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rso03032
]
RSc3440 (gyrB)
03400 DNA repair and recombination proteins [BR:
rso03400
]
RSc3440 (gyrB)
Enzymes [BR:
rso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RSc3440 (gyrB)
DNA replication proteins [BR:
rso03032
]
Prokaryotic type
DNA Topoisomerases
RSc3440 (gyrB)
DNA repair and recombination proteins [BR:
rso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RSc3440 (gyrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CAD16937
UniProt:
Q8XTV6
LinkDB
All DBs
Position
complement(3710650..3713178)
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AA seq
842 aa
AA seq
DB search
MTEQQKPQSTPAESSSYGAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSI
DEALAGHCTEIHVTIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSAAEIVMTELHAGGKF
DQNSYKVSGGLHGVGVSCVNGLSKWLKLTVRRDGRVHHMEFARGIPQNRLLEPAEAPDGK
TVEVSPLRVSGTTDKRGTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIKLTDQ
RTGKEEDFAFSGGVKGFVEYINKNKTVLHPTVFNATGEKDGVGVEVSMQWNDGFNEQVLC
FTNNIPQRDGGTHLTGLRAAMTRVINKYIADNEIAKKAKVETSGDDMREGLTCVLSVKVP
EPKFSSQTKDKLVSSEVRLPVEEVVAKALADFLLETPNDAKIICGKIVEAARAREAARKA
REMTRRKGVLDGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKG
KILNVERARFDKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRT
LLLTFFYRQMPEIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLMRQALDTAILVR
ADGTEIASDALAELARQYQFSRAVIERLSRVIDADALRAIAEGVALDLSSEAGAEASAKA
LKARLLEMQGNASSANGGATADAFMQYDEKHEKYRVMVVRRQHGNQRLSHIDADFVAGAD
YATLSQTAQTFQGLIGEGAKVRRGTGDKQREQGVTDFHAAITWLLGEAERGISRQRYKGL
GEMNPSQLWETTMDVTQRRLLKVQIEDAIAADQIFTTLMGDDVEPRRNFIESNALVARNI
DV
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaacagcagaaaccgcaatccacacccgccgaaagcagcagctacggcgccgcc
tcgatccagatcctggaaggcctggaggcggtgcgcaagcggccgggcatgtacatcggc
gatacgtcggacggcaccggcctgcaccacctcgtgttcgaggtgctggacaactccatc
gacgaggcgctggcggggcattgcaccgagatccacgtcaccatccacaccgacaactcg
atctccgtgatcgacaacggccgcggcatcccgaccggcatcaagttcgatgacaagcac
gagccgaagcgcagcgcggccgagatcgtcatgaccgagctgcacgccggcggcaagttc
gaccagaacagctacaaggtgtcgggcggcctgcacggcgtgggtgtgtcgtgcgtgaac
ggcctgtcgaagtggctcaagctgacggtgcgccgcgacggccgcgtgcaccacatggaa
ttcgcgcgcggcatcccgcagaaccgcctgctggagccggccgaggcgccggacggcaag
acggtcgaagtgtcgccgctgcgcgtgtcgggcaccaccgacaagcgcggcaccgaagtg
cacttcctggccgacgaagagatcttcaccaacgtcgagtaccactacgagatcctctcc
aagcgcatccgcgagctctcgttcctgaacaacggtgtgcacatcaagctgaccgaccag
cgcaccggcaaggaagaagacttcgccttctcgggcggcgtgaagggcttcgtcgagtac
atcaacaagaacaagaccgtgctgcacccgaccgtcttcaacgccacgggcgagaaggac
ggcgtgggcgtggaagtgtcgatgcagtggaacgacggcttcaacgagcaggtgctctgc
ttcaccaacaacatcccgcagcgcgacggcggcacccacctgaccggcctgcgcgccgcg
atgacgcgcgtcatcaacaagtacatcgccgacaacgagatcgccaagaaggccaaggtc
gaaacctccggcgatgacatgcgcgaaggcctgacctgcgtgctgtcggtgaaggtgccc
gagcccaagttcagctcgcagaccaaggacaagctcgtttcgtccgaagtgcgcctgccg
gtggaagaagtcgtggccaaggcgctggcggacttcctgctggaaacgcccaacgacgcc
aagatcatctgcggcaagatcgttgaagccgcccgcgcccgcgaagccgcccgcaaggcc
cgcgagatgacgcgccgcaagggcgtgctcgacggcatgggcctgcccggcaagctggcc
gactgccaggagaaagacccggcgctgtccgaactgttcatcgtcgagggtgactccgca
ggcggctcggccaagcagggccgcgaccgcaagttccaggcgatcctgccgctcaagggc
aagatcctgaacgtggaacgcgcgcgcttcgacaagatgctctccagccaggaagtgctc
acgctcatcaccgccatgggcaccggcatcggcaaggacgactacaacctcgacaagctg
cgctaccaccgcatcatcatcatgaccgacgcggacgtggacggctcgcacatccgcacg
ctgctgctgacgttcttctaccgccagatgcccgagatcatcgagcgcggccacgtgtac
atcgcccagccgccgctgtacaagatcaagcacggcaaggaagagcgctacatcaaggac
gacgtcgagatggccgcgtacctgatgcgccaggccctcgacaccgccatcctggtgcgc
gccgacggcaccgagatcgccagcgacgcgctggccgagctggcgcggcagtaccagttc
tcgcgcgccgtgatcgagcgactgtcgcgcgtgatcgatgcggatgcgctgcgcgccatt
gccgaaggcgtggcgctggacctgtccagcgaagcgggcgccgaagccagcgccaaggcg
ctcaaggcgcggctgctggaaatgcagggcaacgccagcagcgccaacggtggcgcgacg
gcggatgcgttcatgcagtacgacgagaagcacgagaagtaccgcgtgatggtcgtgcgc
cgccagcacggcaaccaacgcctatcgcacatcgacgccgacttcgtggccggcgccgac
tacgccacgctgtcgcagactgcgcagaccttccaggggttgatcggggagggggccaag
gtgcggcgtgggactggggataagcagcgcgagcagggtgtgacggacttccatgcggcg
attacttggctgctgggtgaggctgagcgtggcatcagccggcaacgttataaggggctg
ggggagatgaacccctcgcagctgtgggagaccactatggatgttacgcagcggcgactg
ctcaaggtgcagattgaagacgctattgcggcggatcagatctttactacgctgatgggg
gatgacgtggagcctcggcggaactttattgagagtaatgcgttggtggcgcggaatatt
gatgtttga
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