Ralstonia pseudosolanacearum GMI1000: RSp1276
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Entry
RSp1276 CDS
T00071
Name
(GenBank) probable atp-dependent dna helicase II protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso03420
Nucleotide excision repair
rso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSp1276
03430 Mismatch repair
RSp1276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rso03400
]
RSp1276
Enzymes [BR:
rso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSp1276
DNA repair and recombination proteins [BR:
rso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSp1276
MMR (mismatch excision repair)
Other MMR factors
RSp1276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
CAD18427
UniProt:
Q8XQF1
LinkDB
All DBs
Position
megaplasmid:1613931..1616063
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AA seq
710 aa
AA seq
DB search
MPAAIPTPETAPAPDYLAQLNDQQRLAVEFGISGADAAQTGPLLVLAGAGSGKTHTLGWR
VAHLVANGADPQRILLLTFSRRAASELSSRAGHLLARALQGSAGARSAAGTAYRTALPWA
GTFHGIGARLLREYAERIGLAPDFTIHDRSDAADLLNVVRHELNLSTKERRFPLKQTCLA
IYSRAINAESPLDAVLKQHFPWCAMWQAQLRTLFDAYVEAKQAQHILDYDDLLLYWHAMV
ADAGLAAEIGARFDHILVDEYQDTNRLQSSILRALRPDGRGLTVVGDDAQSIYAFRAATV
RNILDFPRHFTRPAHTVLLERNYRSTQPILEASNGVMRFATERFAKTLWTDRASTHRPRL
ISVRDEAEQARCVAEQVLRHREGGLALKSQAVLFRTASHSAPLEIELARRNIPFVKYGGL
KFLEAAHVKDVLSVLRWAENPRNRIAGFRVIQLLPGAGPATAARVLDTMAEAADPVAALL
AHAPPARLAGDWAALMTLMATLRAPKDNATWAGELEAVGAWYAPHMERLHDDAAVRQGDL
DQLARMAATYASRERFLTEMTLDPPELTSDESGEPYRDEDYLILSTIHSSKGQEWKAVYL
LNAVDGCMPADLGAGSHDELEEERRLLYVAMTRARDHLDILVPQRFYMTQQTPNGDRHLY
ASRTRFIPPALLPLFEACAWPPPEPGADPAAEARAAAKVDLAKKMRGYWR
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgccgccatccccaccccggaaaccgcccccgcgcccgactacctggcgcaactg
aacgaccagcagcgcctggccgtcgagttcggcatttcgggggcggatgcggcgcagaca
ggcccgctgctggtgctggcgggcgcgggctccggcaagacgcatacgctgggctggcga
gtggcgcacctggtggccaatggcgccgatccgcagcgcatcctgctgctgacgttctcg
cgccgggcggcgagcgagctgtccagccgcgccggccacctgctggcgcgcgccctgcag
ggcagcgccggcgcgcggtcggccgccggcaccgcataccggaccgcgctgccctgggcc
ggcaccttccacggcatcggcgcgcgcctgctgcgcgaatacgctgagcgcatcggcctc
gcgcccgatttcaccatccacgaccgcagcgacgcggccgacctgctcaatgtcgtgcgg
catgagttgaacctgtcgaccaaggaacgccgcttcccgctcaagcagacctgcctggcc
atctactcgcgcgccatcaatgccgagagcccgctggatgccgtgctcaagcagcacttc
ccgtggtgcgcgatgtggcaggcgcagctgcgcacgctgttcgacgcctacgtggaggcc
aagcaggcccagcacatcctcgactacgacgacctgctgctgtactggcacgcgatggtg
gccgacgccggcctggccgccgagatcggcgcgcgcttcgaccacatcctcgtcgacgaa
taccaggacacgaaccggctgcagtcgtcgatcctgcgcgcgctgcggcccgacgggcgc
ggcctgacggtggtcggcgacgatgcgcaatccatctacgccttccgcgcggcgacggtg
cgcaacatcctcgacttcccgcgccacttcacgcggccggcgcacacggtgctgctggag
cgcaattaccgctccacacagccgatcctggaggcgtccaacggcgtgatgcgctttgcc
accgagcgcttcgccaagacgctgtggaccgaccgcgcatcgacccaccgcccgcgcctg
atctcggtgcgcgacgaggccgagcaggcgcgctgcgtggccgagcaggtgctgcggcat
cgcgagggcgggctggcgctgaagtcgcaggccgtgctgttccgcaccgccagccacagc
gcgccgctggagatcgagctcgcccgccgcaacatccccttcgtcaaatacggcggactc
aaattcctggaggccgcgcacgtcaaggacgtgctgtcggtgctgcgctgggccgagaat
ccgcgcaaccgcatcgccggcttccgcgtcatccagctgctgccgggcgccggccccgcc
accgccgcgcgcgtgctcgataccatggccgaggcggccgacccggtcgccgcgctgctg
gcccatgcgccgccggcacgcctggccggcgactgggcggcgctgatgacgctgatggcc
acgctgcgcgcaccgaaggacaacgcaacctgggccggtgaactggaggccgtcggcgcc
tggtacgccccccacatggagcgcctgcacgacgatgcggccgtccgccagggcgatctc
gaccagctcgcccgcatggccgcgacctacgcctcgcgcgagcgcttcctgaccgagatg
acgctcgacccgcccgagctgaccagcgatgaatccggcgagccgtaccgcgacgaggac
tacctgatcctgtcgaccatccactcctccaaggggcaggagtggaaggccgtctacctg
ctcaacgccgtggacggctgcatgcccgccgacctgggcgccggctcgcacgacgagctg
gaggaagagcgccggctgctctacgtggccatgacgcgcgcccgcgaccacctcgacatc
ctggtgccgcagcgcttctacatgacccagcagacgcccaacggcgaccgccacctctac
gcatcgcgcacgcgcttcattccgccggcgctgctgccgctgttcgaggcctgcgcctgg
ccgccgcccgagcccggcgccgacccggcggccgaggcacgcgcggcggccaaggtcgac
ctggccaagaagatgcgcggctattggcggtag
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