Rhizobium sophoriradicis: N2597_05970
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Entry
N2597_05970 CDS
T11817
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
rsop Rhizobium sophoriradicis
Pathway
rsop00521
Streptomycin biosynthesis
rsop00523
Polyketide sugar unit biosynthesis
rsop00525
Acarbose and validamycin biosynthesis
rsop00541
Biosynthesis of various nucleotide sugars
rsop01100
Metabolic pathways
rsop01110
Biosynthesis of secondary metabolites
rsop01250
Biosynthesis of nucleotide sugars
Module
rsop_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
rsop00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
N2597_05970 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
N2597_05970 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
N2597_05970 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
N2597_05970 (rfbB)
00525 Acarbose and validamycin biosynthesis
N2597_05970 (rfbB)
Enzymes [BR:
rsop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
N2597_05970 (rfbB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
KR
NAD_binding_10
NmrA
Motif
Other DBs
NCBI-ProteinID:
UWU35856
LinkDB
All DBs
Position
complement(1207883..1208935)
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AA seq
350 aa
AA seq
DB search
MRILVTGGAGFIGSALVRHLVSEIGAEVLNVDTLTYAGNLASLKSVESAPNYQFLRADIC
DRAGMQEAFASFRPDIVMHLAAESHVDRSISGAADFIQTNIVGTFSLLDAARHYWDGLDA
RRKSDFRFLHVSTDEVYGSLDDEGLFEETTPYDPSSPYSASKAASDHLAIAWHRTYGLPV
VVSNCSNNYGPFHFPEKLIPLMILNALEDKPLPVYGNGANVRDWLYVEDHARALYTIASR
GRPGEKYNVGGRNERRNIDVVHRICAILDGVYRDKAPHARLITNVTDRPGHDARYAIDAT
KLESELGWKAQETFETGIEKTVHWYLENEWWWRPLRENVYSGERLGVFKG
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatactggtcacgggcggagctggctttatcggatcggcattggtgcgccatctc
gtcagcgagatcggcgccgaggtgctgaatgtcgacacgctgacctatgccggcaatctg
gcatcgctgaaatccgtcgaatcggcgccgaactatcaattccttcgggccgacatctgc
gaccgcgccgggatgcaggaagcattcgcgtccttccgccccgatatcgtcatgcatctc
gcggcagagagccatgtcgaccgctcgatctcgggcgctgccgatttcattcagaccaac
atcgtcggcacattcagcctgctggatgccgcacggcactattgggatgggcttgacgct
cgccgcaagagcgacttccggtttctgcatgtctcgacggatgaggtctacggctcgctc
gacgacgagggcctcttcgaggagacgacgccatacgatccgtcctcgccctactccgca
tccaaggccgcgagcgaccatctggcaatcgcctggcaccgcacctacggcctgccagtc
gtcgtctccaattgctccaacaattacggcccattccatttcccggaaaagctcatcccg
ctaatgatcctgaacgcactggaggacaagcctcttccggtttacggcaatggcgcaaat
gtccgcgactggctctatgtcgaagaccatgcccgcgcgctctacacaatcgcatccaga
gggcgccccggcgaaaaatacaatgtgggcggccgcaatgaacgcaggaacatcgatgtc
gttcaccgcatctgcgccattctcgacggcgtctaccgcgacaaggcaccgcatgcacgt
ctgatcaccaacgtcacggatcgccccggacacgacgcacgctatgcgatcgatgccacg
aaactcgaaagcgaactcggctggaaggcgcaagagaccttcgaaaccggcatcgagaag
accgtgcactggtacttggaaaacgaatggtggtggaggccgctgcgcgaaaacgtctac
tccggcgaacgcctcggcgttttcaaggggtga
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