KEGG   Rhizobium sophoriradicis: N2597_20165
Entry
N2597_20165       CDS       T11817                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rsop  Rhizobium sophoriradicis
Pathway
rsop03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rsop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    N2597_20165 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsop03021]
    N2597_20165 (rho)
   03019 Messenger RNA biogenesis [BR:rsop03019]
    N2597_20165 (rho)
Transcription machinery [BR:rsop03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     N2597_20165 (rho)
Messenger RNA biogenesis [BR:rsop03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     N2597_20165 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 DUF6360 AAA
Other DBs
NCBI-ProteinID: UWU34412
LinkDB
Position
complement(4132922..4134187)
AA seq 421 aa
MAEMKLQELKSKSPTDLLAFAESLEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKMELDIPTSKDLSPRVIDLVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNSDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaatgaagcttcaggaacttaagagcaaatccccgacggatcttctggctttc
gccgaatcgctcgaggtcgagaatgcaagcacgatgcgcaagcaggagctgatgtttgcg
atcctcaagatgctggccagccaggatgtggagatcatcggcgaaggggtggtcgaggtg
ctgcaggacggcttcggcttcctgcgctcggccaacgccaactacctgcccggccctgat
gatatttatatctcgccatcgcagatccgccgtttctctttgaagacaggcgacacggtc
gagggaccgatccgcggaccgaaggagggcgagcgctatttcgcgctgctgaaggtcaac
accatcaatttcgacgatccggaaaagatccgtcacaaggttcatttcgacaacctgacg
ccgctctatccgaatgagcgcttcaagatggaactcgacattccgacgtccaaggatcta
tcgccccgcgtgatcgatctggtggcgccgctcggcaagggccagcgcggattgatcgtc
gcgccgccgcgcaccggtaagaccgtccttcttcagaacatcgcccattcgatcacggcc
aaccacccggaatgctatctcatcgtccttctgatcgacgaacgtccggaggaagtgacg
gacatgcagcgttccgtccgcggcgaggtcatttcctcgaccttcgacgaaccggcggtg
cgtcacgtccaggtggccgaaatggtcatcgaaaaggccaagcgtctcgtcgagcatggc
cgcgacgtcgtgatactgctcgattcgattacacgcctcgggcgcgcctacaacacagtc
gtcccctcctccggcaaggtgctaacgggtggcgtcgacgccaacgcactgcaacggccg
aagcgcttcttcggcgccgcgcgcaacatcgaggaaggtggttctctgaccatcatcgca
acggcgcttatcgataccggcagccgcatggacgaagtgatcttcgaagagttcaagggt
accggcaactcggaaatcgtcctcgaccgcaaggtcgccgacaagcgcatcttcccggcg
atggacatcctcaagtccggcacgcgtaaggaagacctgctcgtgccacgccaggatctg
cagaagatcttcgttcttcgtcgtatccttgctccgatgggcaccacggatgcaatcgaa
ttcctgatcgacaagctcaaacagacgaagaacaattccgatttcttcgactcgatgaat
acctga

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