Rhizobium sophoriradicis: N2597_31790
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Entry
N2597_31790 CDS
T11817
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
Organism
rsop Rhizobium sophoriradicis
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GFIT
Motif
Pfam:
IcmF-related_N
IcmF-related
IcmF_C
IcmF_helical
DUF4129
Motif
Other DBs
NCBI-ProteinID:
UWU38699
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Position
pCC511_4:209961..213566
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AA seq
1201 aa
AA seq
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MQSIKKALRWQWLRVGGAAIVCALIFTLGPHISVGGFAPLDSLRSQIAASMLIPVGYTVI
YLIQSQLYKVQAYFEDLVQSRVSGALDAGGAEQKKGDPRPSDRSVGQASTLAERELEAIR
HRFRETLTTLKGRRYAGGISRRWLYQRPWYVMIGPPNSGKTTAIVNSGLSFPMAARSGLR
AAGGLAGTENCDWWITDDAVFVDTAGRYTIQEGDADRDKAVWRGLLRMLRRSRPRQPLNG
ALVTIAISELNSTSEEVLADRARCIRERLLEVYRELRLQLPIYVLFTKSDLLAGFVEFFD
DLGREGREAVWGFTFAQEASEDEGDPMAFAAAYDALVGRLNERLLERMQHESNLQRRALM
FGFPQQVASLKHLTQQFLKEAFGGNSFQEPLMLRGVYFLSGTQIGMPFDRVANARSQTFE
IAQPPCTALRGPGRNYFISRLLREVVFAEAGLVDANHRFDRRQRRIRYGAYTTIAAVIVT
ASVLWTFSYIRNVQLIESVRLMAGSYARGAEKLKLDRVESGDLRPILPLLQRLRDANGDS
AGGRLSSSGLDQSKKIKVQTLAAYRRAVNTILLPRLMFRLETLLVERHDDDQFVYQALKV
YLMLGQQGPLQRAVVKNWMAADWRVMFPAEADAGLRSALADHLDALMEGPLPHSELNGEL
IERSRAKLQTVSMARRVLDIIATSPEASRAPTWRLADHAGPLAQGVLARKSGQPLSEGVP
GIYTRAGFYGTFLRLLPQVADAVAAEGWVLDSQVVAPIAAGDVSQKLRRSAADLYAQEFA
LRWDQLIGDMSIRPSGGIDDALRTLNTLSAPTSPMRLFLFAAAQELKLKQPPAPEDGLTK
GDSVPQGEVLPSELEALFRSQPAADTPEAHVQLYMGDHFRWLHQLVEVPSNSQAGAQAPI
DSALRDLGELYRSLSQAQGLAGSNILEHNGQAGVAIQQIEAGAADLPEPIRQWILGLSRH
SSDLTVSGMRRGLASGWAGGPGDLCRRATEGRYPFASGSRRDIPLSDFARLFGRKAEIDT
FFAENLSPFVDKSKGSWQFRPTSGVDFPIGRNTLAQFQRAATIRDTMFDDAGQVSVGFLL
TVAETDPLTDQVVVDIDGQRLEHRRGTAAAAMHFHWPTAGGVGGASVAFIGFQGATLSRS
GHWALFRLLNEADKQPLGGGDLIQVRLVSGRHWAVFNLQPDSVMSPLSRNLLSEFRCPDF
L
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcaatcaagaaagcgcttaggtggcaatggctccgtgtcggcggggcggcgatc
gtatgtgccttaatcttcacgctcggaccgcatatctcggtcggaggatttgcgccgctt
gacagccttcgcagccagatcgcggcatcgatgctgattccggtcggatacaccgtgatc
tacttgatccagtcccagctttacaaggttcaggcctattttgaagacctcgtccaatca
cgagtgtcgggagcgctggacgcgggtggggccgagcagaagaagggagacccaaggcct
tccgaccgaagtgtggggcaagccagcacgcttgctgaaagagagctggaggcgattcgt
catcgtttccgcgagacccttaccacactcaaggggcgccgctacgcaggaggtatcagc
aggcggtggctctatcagcggccctggtatgtgatgatcggtccgcccaactcggggaag
accacagcaatagtcaattccgggctcagctttccgatggcggcgaggtccggtctgaga
gccgccggtgggttagcgggtacggaaaactgcgactggtggatcaccgatgacgcggtg
ttcgtcgacactgctgggcgctacacgatacaggagggtgatgcagaccgggacaaagcg
gtttggcgtggcttgcttcgtatgctcagacgctcccggccacggcagccgctgaacggt
gccttagtcacgatcgcaatcagcgagctgaattctacatccgaggaagtgctcgccgat
cgcgcgcgctgtatccgtgagcggctcctcgaagtgtacagggagcttcgcctgcaactg
ccgatttatgtgcttttcactaagagcgatctgctggcgggatttgttgaattcttcgac
gatctgggtcgcgaggggcgggaggcggtgtgggggttcacctttgcgcaagaggcgtcg
gaggacgaaggcgatccgatggcgtttgccgcagcatacgatgcgcttgttggccgccta
aacgaaaggctgcttgaacgaatgcagcacgaaagcaacctccagcgtcgtgcgctcatg
ttcggcttcccacagcaggtcgctagcctcaagcacctgacgcaacagttcttgaaggaa
gcctttggcgggaattcgttccaggaaccgcttatgctccgcggcgtctacttcttaagc
ggcacgcaaattggcatgcccttcgatcgagttgcgaacgccagatctcagaccttcgag
atcgctcagccgccctgtacagcgcttcgtggcccgggccgtaattatttcatcagccgg
ctgctgcgcgaagtcgttttcgccgaagctgggctcgtcgatgccaatcaccgcttcgat
cggcgccagcggcggatccggtatggcgcctacacgacgatagcggcggtcattgttacc
gccagcgtcttatggacgttcagctatattcggaatgttcagctgatcgagagcgttcgc
ctaatggctggcagctatgccagaggggctgaaaagctgaagctcgaccgggttgagagt
ggcgatcttcgacccatcctgccactgcttcagcggctgcgtgatgccaacggcgacagc
gcgggcggccgcctatcaagttcgggtctcgaccagagtaagaaaatcaaggttcagacg
ctcgcggcgtaccgccgcgccgtgaacaccatcctgctgccgcggctgatgttccggttg
gaaaccttattggtcgagcggcacgacgatgatcagttcgtctaccaggcgttaaaggtt
tacctgatgctgggtcagcagggtccgctccagcgcgcggtcgtcaaaaactggatggct
gccgactggcgagtgatgtttccggccgaagccgatgccggcctgcgcagcgcgctcgct
gatcacctggatgcactcatggaagggccgctgccccatagtgagcttaatggcgaactg
atcgagaggagccgcgcgaagctccagaccgtctcgatggcgcgccgcgtcctcgacatc
atcgcgaccagtcccgaagcctcgcgggcgccaacctggcgtctggccgaccatgccggg
ccgctggcgcagggcgtcctggctcgcaaatcgggacagccgctcagcgagggggttcct
ggcatctacacgagggcggggttttacggaaccttcctgcgattgctgccgcaagtggct
gacgctgtcgctgcagaaggctgggttctcgactcacaggtagtcgcgccgattgcagcc
ggtgatgtgagccagaagctgcggcgttcggcggcggatctctacgctcaggagttcgcg
ttgcgctgggaccagctcattggcgatatgtccatccgcccgtctgggggtatcgatgac
gcgctgcgcaccttgaacacgctgtccgcgccgacgtcaccaatgcgcctgttccttttc
gcggcggcgcaggagctaaagctcaagcaaccaccggctcccgaggacggcttgacgaaa
ggtgacagtgtcccccagggcgaggtgttgccaagcgagctcgaggcactgttccggtct
caaccggccgcggacacgcctgaagctcacgtccagctctatatgggcgatcatttccgg
tggctgcaccagctggtcgaagtgccgtcgaacagccaagcgggcgcgcaggcgccgatc
gacagtgctctccgggatctcggcgaactgtatcgctccctcagccaggcgcaggggctg
gcgggttcgaacatcttggaacacaacgggcaggcgggcgtcgccatccaacagatcgag
gcgggggcggccgatctgcccgaacccatccggcaatggatcctcggcctcagccgccac
agctcggacctaaccgtcagcggcatgaggcgcgggttggcgagcggttgggcgggcggc
cccggcgatttgtgccgacgggctaccgaaggacggtatcccttcgcgagcggatcccgc
cgggatatccctttgagcgatttcgcccggctgttcggccgcaaggcggagatcgacact
ttcttcgccgagaacctttccccattcgtcgacaaatccaaaggttcgtggcagtttcgg
ccaacgagcggtgtcgatttccctatcggccgcaataccttggcccagttccaacgggca
gccacgatccgcgacaccatgttcgatgatgccggccaggtgtcagttggattcctgctc
accgtcgccgagaccgatccgttgacagaccaggtggtggtagacatcgacggccagcgc
ctcgaacatcgacgaggaacggccgccgcggccatgcatttccattggcctacggccggc
ggcgtcggcggcgcttccgtcgctttcatcggttttcaaggcgccaccctctccaggagc
ggccattgggcgctgtttcgcctcttaaatgaggcggataagcagccattgggaggaggg
gaccttattcaggtacgactggtgtccggtcgccattgggcggtttttaacctccagcct
gacagcgtgatgagcccgttgtcccgcaatctgctgtcagaattccgatgtccagatttc
ttatga
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