KEGG   Cereibacter sphaeroides 2.4.1: RSP_1231
Entry
RSP_1231          CDS       T00284                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
rsp  Cereibacter sphaeroides 2.4.1
Pathway
rsp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rsp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RSP_1231 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsp03021]
    RSP_1231 (rho)
   03019 Messenger RNA biogenesis [BR:rsp03019]
    RSP_1231 (rho)
Transcription machinery [BR:rsp03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RSP_1231 (rho)
Messenger RNA biogenesis [BR:rsp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RSP_1231 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 S1CSD-TOTE-2 NACHT AAA_22 OB_RNB AAA Lactamase_B
Other DBs
NCBI-ProteinID: ABA80412
UniProt: P52156
LinkDB
Position
1:complement(3002895..3004163)
AA seq 422 aa
MNERLNLADLKAKTPADLLAMAEEWEIENAPSMRKGEMMFSILKEHAEEGYEVGGDGVLE
VLQDGFGFLRSPEANYLPGPDDIYVSPEILRQFSLRTGDTIEGVIVAPRENERYFSLTRV
TKINFDDPERARHKVHFDNLTPLYPDERLKMEVDDPTMKDRSARIIDLVAPIGKGQRGLI
VAPPRTGKTVLLQNIAHSIATNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPA
TRHVAVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQR
PKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVFP
AMDILKSGTRKEDLLVDKSDLQKTYVLRRILNPMGTTDAIEFLISKLRQTKSNAEFFDSM
NT
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgaacgaacgtctcaacctcgctgacctgaaggccaagactccggccgatctactggcc
atggccgaggagtgggagatcgagaacgcgccttccatgcggaagggcgagatgatgttc
tcgatcctcaaggaacatgcggaggaaggctacgaagtcggcggagacggcgtgctcgag
gtgctgcaggacggtttcggcttcctgcgctcgcccgaggccaactatctgccgggcccg
gacgacatctacgtctcgcccgagatcctgcgtcagttctcgttgcgcaccggcgacacg
atcgagggcgtgatcgtcgcgccccgcgagaacgaacgctatttcagcctgacgcgggtg
acgaagatcaacttcgacgatcccgaacgggcgcgccacaaggtgcacttcgacaacctc
acgccgctctatcccgatgaacggctgaagatggaagtcgacgatcccacgatgaaggac
cgttccgcgcgcatcatcgatctggtggcgccgatcgggaaggggcagcgcgggctgatc
gtggcgccgccgcggaccggcaagacggtgctcctgcagaacatcgcccactccatcgcg
accaatcaccccgagtgctacctgatcgtgctgctcatcgacgagcggcccgaggaggtc
acggacatgcagcggtcggtgaagggggaggtcgtctcctcgaccttcgacgagcccgcc
acgcggcacgtcgccgtggccgagatggtcattgagaaggccaagcgcctcgtcgagcac
aagcgcgacgtggtgatcctgctcgactcgatcacccgcctcgggcgcgccttcaacacc
gtggtgccctcgtccggcaaggtgctgaccggcggcgtcgatgccaacgcgcttcagcgt
ccgaaaaggtttttcggcgcagcgcggaacatcgaggaaggcgggtcgctgacgatcatc
gcgaccgccctgatcgataccggcagccggatggacgaagtgatcttcgaagaattcaag
ggtaccggcaactccgagatcgtccttgaccggaaggtcgccgacaagcgcgtgttcccc
gccatggacatcctcaaatctggcacccggaaagaggatctgctggtcgacaagtccgat
ctgcagaagacctatgtcctgcgccgcatcctgaacccgatgggcaccaccgatgcgatc
gagttcctgatctccaagctgcggcagaccaagagcaacgcggaattcttcgattccatg
aacacctga

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