Cereibacter sphaeroides 2.4.1: RSP_1712
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Entry
RSP_1712 CDS
T00284
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rsp
Cereibacter sphaeroides 2.4.1
Pathway
rsp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rsp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RSP_1712 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsp03021
]
RSP_1712 (rpoC)
03400 DNA repair and recombination proteins [BR:
rsp03400
]
RSP_1712 (rpoC)
Enzymes [BR:
rsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RSP_1712 (rpoC)
Transcription machinery [BR:
rsp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RSP_1712 (rpoC)
DNA repair and recombination proteins [BR:
rsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RSP_1712 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
LisH_PAC1
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
ABA77855
UniProt:
Q3J5S9
LinkDB
All DBs
Position
1:297841..302088
Genome browser
AA seq
1415 aa
AA seq
DB search
MNQELSTNPFNPVAPVKTFDEIKISLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLMTEEEFLDAQDQYGADAFT
ANIGAEAIREMLSAIDLEQTAETLREELKEATGELKPKKIIKRLKIVESFLESGNRPEWM
ILTVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQEAVDALFDNGRRGRVITGTNKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYTTMERRGMKGEGMAFSSVEEVEHAL
AAGEVHLHATITARIKQIDEEGNEVVKRYQTTPGRLRLGNLLPLNAKAPFELVNRLLRKK
DVQNVIDTVYRYCGQKESVIFCDQIMGMGFREAFKAGISFGKDDMLIPDTKWPIVNEVRD
QVKEFEQQYMDGLITQGEKYNKVVDAWSKCSDKVAGEMMAEISAVRYDDAGAEKEPNSVY
MMSHSGARGSPAQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVRTHDCGTENAITASAAVNEGEVVSPLAERVLGRV
AAEDILVPGSDEVIVARGELIDERRADLVDQANVASVRIRSPLTCEAEEGVCAMCYGRDL
ARGTLVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFLEASQEGRIEFRNPN
LLENANGEQIVMGRNMQLAIIDEAGQERATHKLTYGAKVHVKDGQTVKRATRLFEWDPYT
LPIIAEKAGVARFVDLVSGISVREDTDEATGMTQKIVSDWRSTPKGGDLKPEIIIMNPET
GDPMRNEAGNPISYPMSVEAILSVEDGQTVRAGDVVARIPREGARTKDITGGLPRVAELF
EARRPKDHAIIAENDGYVRFGKDYKNKRRITIEPVDDTLNSVEYMVPKGKHIPVQEGDFV
QKGDYIMDGNPAPHDILRILGVEALANYMIDEVQEVYRLQGVKINDKHIEVIVRQMLQKY
EILDSGETTLLKGEHVDKAELDEVNQKAMDHGMRPAHAEPILLGITKASLQTRSFISAAS
FQETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATSRVKKIAHDRDQKVIDTRR
AEAESAAALAAPTDGVIDLGSEDSGLVETVENREE
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactctcgaccaatccgttcaacccggttgcgccggtcaagaccttcgac
gagatcaagatctcgctcgcttcgccggaacggatcctctcgtggtcctacggcgagatc
aagaagcccgagaccatcaactaccggaccttcaagcccgagcgcgacggcctgttctgc
gcgcggatcttcgggccgatcaaggactacgagtgcctctgcggcaaatacaagcgcatg
aagtatcgcggcgtcgtctgcgagaaatgcggcgttgaagtcacgctccagaaggtgcgt
cgcgagcggatgggccatatcgagctcgccgccccggtcgcgcacatctggttcctgaag
tcgctgccgagccgcatcggcctcatgctcgacatgacgctgcgggatctggaacgcatc
ctctacttcgagaactacgtcgtcatcgagccgggcctgacggacctcacctacggtcag
ctgatgaccgaggaagagttcctcgatgcgcaggaccagtatggcgccgatgccttcacc
gccaacatcggcgcggaagcgatccgcgagatgctgtcggccatcgacctcgaacagacc
gccgagacgctccgcgaggagttgaaggaggccacgggcgaactgaagccgaagaagatc
atcaagcggctgaagatcgtggaatcgttcctcgagtcgggcaaccggccggagtggatg
atcctgaccgtgctgccggtgatcccgccggaactgcgcccgctggtgccgctcgacggt
ggccggttcgccacgtcggacctgaacgacctctaccgccgcgtcatcaaccggaacaac
cgcctcaagcggctgatcgagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgg
atgctgcaggaagccgtcgacgcgctcttcgacaacggccgccgcggccgcgtcatcacg
ggcaccaacaagcgcccgctgaagtcgctgtcggacatgctcaagggcaagcagggccgg
ttccgtcagaacctgctcggcaagcgcgtggacttctcgggccgttcggtcatcgtgacc
gggccggagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttc
aagcccttcatctactcgcggctggaggccaagggcctgtcctcgaccgtgaagcaggcg
aagaagctggtggagaaggaacgccccgaggtctgggacatcctggatgaagtgatccgc
gagcacccggtcctcttgaaccgggcgccgacgctgcaccgtctgggcatccaggctttc
gagccgatcctgatcgaaggcaaggcgatccagctgcacccgctggtctgctcggccttc
aacgccgacttcgacggcgaccagatggccgtccacgtccccctctcgctggaagcccag
cttgaggcgcgcgtgctgatgatgtcgaccaacaacgtgctgtcgcccgccaacggcgcg
ccgatcatcgtgccgtcgcaggacatggttctggggctctattacaccacgatggagcgc
cgcggcatgaagggcgagggcatggccttctcgtccgtcgaagaggtcgaacatgccctt
gccgccggcgaggtgcatctgcacgcgaccatcaccgcccggatcaagcagatcgacgag
gaaggcaacgaggtcgtcaagcgctaccagaccacgccgggccgcctgcggctgggcaac
ctgctgccgctgaacgccaaggctccgttcgagctcgtgaaccgtcttctgcggaagaag
gacgtgcagaacgtcatcgacaccgtctaccgctactgcggccagaaggagtcggtgatc
ttctgcgaccagatcatgggcatgggcttccgcgaagccttcaaggccggcatctcgttc
ggcaaggacgacatgctgatcccggacaccaaatggccgatcgtgaacgaggttcgcgat
caggtgaaggagttcgagcagcagtacatggacggcctgatcactcagggcgaaaagtac
aacaaggtcgtcgacgcctggtcgaaatgctcggacaaggtggcgggcgagatgatggcc
gagatctcggcggtccggtacgacgatgccggcgccgagaaggagccgaactcggtctac
atgatgtcccactccggggcgcggggttcgccggctcagatgaagcagctgggcgggatg
cgcggcctgatggccaagccgaacggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgtgctcgagtacttcaactcgacccacggcgcccggaagggtctg
gccgataccgcgctgaagacggcgaactcgggctacctgacccgtcgtctcgtggacgtg
gcgcaggactgcatcgtgcgcacgcacgattgcggcaccgagaatgcgatcacggcctcg
gccgcggtgaacgagggcgaagtcgtgagcccgctggccgagcgggtcctgggccgtgtc
gcggccgaggacatcctcgtgccgggctcggacgaggtgatcgtggcgcgcggcgagctg
atcgacgagcgtcgggcggatctggtcgatcaggcgaacgtggcttcggtgcgcatccgc
agcccgctcacctgtgaagcggaagagggcgtctgcgccatgtgctacgggcgcgacctt
gcccgcggcacgctcgtcaacatcggcgaggcggtgggcatcatcgccgcccagtcgatc
ggcgaaccgggtacgcagctcacgatgcggaccttccacatcggcggcatcgcgcagggc
ggccagcagtcgttcctcgaggcgtcgcaggagggccggatcgagttccgcaacccgaac
ctgctggagaacgccaacggcgagcagatcgtcatgggccgcaacatgcagctcgcgatc
atcgacgaggcggggcaggagcgggcgacgcacaagctgacctacggcgccaaggtccat
gtcaaggacggccagacggtcaagcgggccacgcgcctgttcgaatgggacccctacacc
ctgccgatcatcgccgagaaggccggcgtggcgcggttcgtggatctcgtctcgggcatc
tcggtgcgcgaggacaccgacgaagccaccggcatgacccagaagatcgtgtccgactgg
cgctcgacgccgaagggcggcgacctgaaaccggaaatcatcatcatgaatccggagacg
ggcgatccgatgcggaacgaggcgggcaacccgatctcgtatccgatgtcggtcgaggcg
atcctgtcggtcgaggacggccagaccgtccgggccggcgacgtggtggcgcggatcccg
cgcgagggtgcccggaccaaggacatcaccgggggtcttccccgcgtggcggaactgttc
gaggcccgtcgtccgaaggatcacgcgatcatcgccgagaacgacggctatgtgcgcttc
ggcaaggactacaagaacaagcgccgcatcacgatcgagccggtggacgatacgctgaac
tcggtcgaatacatggtgccgaaaggcaagcacatcccggtgcaggaaggcgacttcgtg
cagaagggtgactacatcatggacggcaacccggctccgcacgacatcctgcggatcctg
ggcgtcgaggcgctggccaactacatgatcgacgaagtgcaggaggtctaccgactgcag
ggcgtgaagatcaacgacaagcatatcgaggtgatcgtgcggcagatgctgcagaaatac
gagatcctcgactcgggcgagaccacgctgctcaagggcgagcatgtggacaaggccgag
cttgacgaggtcaaccagaaggccatggaccacgggatgcggccggctcatgccgaaccg
atcctgctcgggatcaccaaggcgtcgctgcagacccgcagcttcatctcggcggcctcg
ttccaggagacgacgcgcgtgctgaccgaagcctcggtgcagggcaagcgcgacaagctc
gttggcctgaaggagaacgtgatcgtcggccggctgatcccggccgggacgggcggggcc
acctcgcgcgtcaagaagatcgcgcacgaccgcgaccagaaggtgatcgacacccgccgg
gccgaggccgaatccgcggcggcgctggcggcgccgacggacggggtgatcgatctcggc
tccgaggactcggggctggtggaaacggtggagaaccgcgaggagtga
DBGET
integrated database retrieval system
