Cereibacter sphaeroides 2.4.1: RSP_1971
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Entry
RSP_1971 CDS
T00284
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rsp
Cereibacter sphaeroides 2.4.1
Brite
KEGG Orthology (KO) [BR:
rsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsp03016
]
RSP_1971 (rnd)
Enzymes [BR:
rsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RSP_1971 (rnd)
Transfer RNA biogenesis [BR:
rsp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RSP_1971 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABA78119
UniProt:
Q3J515
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All DBs
Position
1:562459..563616
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AA seq
385 aa
AA seq
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MQTITTTEALAAFCEAAKAEPYVTIDTEFLRERTYWSKLCLIQMALPGKTGEAVLVDPIE
GPDMSLEPLYDLFRHEATVKVFHAARQDLEIFFVEGRAFPVPLFDTQVAAMVCGFGEQVG
YETLVKKIAREQLDKTSRFTDWSRRPLSDAQKTYAIADVTHLRVIYEWLSAQIEKNGRQK
WVEEELAILTDPETYTVRPEEAWLRIKTRTTSGRFLAVVKELARFREDYAQKNNVPRSRV
MKDDALLEIASTRPTNAEELGRSRLLLREGRRGDIADGILAAVKAGMEVKNEDLPKPDLS
REQLQVNPALADLLRVLLKAKSESLGVAARLIASASELDAIAAGERDLPSLKGWRLEAFG
ADALRLCRGEIALSAKGNDVRVVKL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccatcaccaccaccgaggcgctggccgccttctgcgaggccgccaaggccgaa
ccctatgtcacgatcgacacggaattcctgcgcgagcgcacctactggtccaagctctgc
ctgatccagatggcgctgccgggcaagaccggcgaggcggtgctggtggaccccatcgag
gggcccgacatgtcgctcgagccgctctacgacctcttccgccacgaggcgacggtgaag
gtcttccatgccgcccggcaggatctcgagatcttcttcgtagaggggcgcgccttcccc
gtgccgctcttcgacacgcaggtcgcggccatggtctgcggcttcggcgagcaggtcggc
tacgagacgctggtcaagaagatcgcacgcgagcagctcgacaagacctcgcgcttcacc
gactggtcgcgccgtccgctcagcgacgcgcagaagacctatgccatcgccgatgtgacc
cacctgcgggtgatctacgaatggctttcggctcagatcgagaagaacggccggcagaag
tgggtcgaggaagagctcgcgatcctcaccgatcccgagacctacacggtccggcccgaa
gaggcttggctcaggatcaagacccgcaccacctcggggcgcttcctcgccgtggtgaag
gagctcgcccgtttccgcgaggactatgcgcagaagaacaacgtcccgcgctcgcgggtg
atgaaggacgatgcgctgctcgagatcgcctccacgcggcccacgaatgccgaagagctg
ggccgctcgcggcttctgctgcgcgaggggaggcggggcgacatcgccgatggcatcctt
gccgcggtgaaggcgggcatggaggtcaagaacgaggacctgccgaagcccgatctctcg
cgcgagcagcttcaggtgaacccggcgctggccgatctcctgcgggtgctgctcaaggcc
aagtcggaaagtctgggcgttgcggcgcggctcatcgcctcggcctccgagctcgatgcc
attgccgcgggcgaacgcgacctgccctcgctcaagggctggcggctcgaggccttcggg
gccgatgcactgcgcctctgccggggcgagatcgccctgtcggccaagggcaacgacgtg
cgcgtggtcaagctctga
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