Cereibacter sphaeroides 2.4.1: RSP_2131
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Entry
RSP_2131 CDS
T00284
Symbol
rne
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rsp
Cereibacter sphaeroides 2.4.1
Pathway
rsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSP_2131 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsp03019
]
RSP_2131 (rne)
03009 Ribosome biogenesis [BR:
rsp03009
]
RSP_2131 (rne)
Enzymes [BR:
rsp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RSP_2131 (rne)
Messenger RNA biogenesis [BR:
rsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RSP_2131 (rne)
Ribosome biogenesis [BR:
rsp03009
]
Prokaryotic type
rRNA processing factors
RSP_2131 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ABA78285
UniProt:
Q3J4J9
LinkDB
All DBs
Position
1:732457..735267
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AA seq
936 aa
AA seq
DB search
MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAA
SGDAVQSGDVAGMDVVDLGEETGADALYETDGSDAGAADSGQPEAPDADEKPYRAMDHAS
DGDDEIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTY
LSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQ
EIRRDYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYR
TAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEAL
VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAV
EKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSL
ALQVLRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRVEADPSLS
SPDYVIEKFKTATRVVPEAVKVISGSADLMGAPVDEPEDDWVEEEPEIVEEAEEVADAAE
AAPSEGQPKKKRRRRRRRRNGVNGANGSDAQENGDEGDESDEDEGDAADEPEAVEAAAAV
PELAPEAVVSAPEPAAAEPEPTPADPVAAPAAEEPAAPRKRTRTRKPKVTEEAPAEAAAE
APAEAPAAEAPAKEAKKPRTRTSRSRKTAAAAEAVPAVEVAVTVDETPAEASLEIARTTE
AAPETTPRRPPPKPPPPKRLWPKRLRRSPSRWPRRRARARTTSPSAAAGGRSAADLQRLT
QGRLRAPLFVPAGADGRLARWPTARAGGIPGLRDLR
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaaaatgcttatcgatgccacccacccggaggagacccgggtcgtggtggtg
gacggaaacaaggtcgaggagttcgacttcgagaccgtcaacaagcggcagctcgccggc
aacatctatctcgccaaggtaacgcgcgtcgagccgtcgctgcaggcggccttcgtcgat
tacggcggcaaccggcacggcttcctcgccttcgccgagatccaccccgactattaccag
atcccggtcgccgaccgtaaggcgctgctcgaggaagagcgggcctatgcgcgggcggaa
gatgacgaggaccacggccgctcgcgccgccggtcccgccccgctccggccgccgcggcc
tcgggcgatgcggtccagtccggcgatgtggcgggcatggatgtcgtcgatctgggcgag
gagacgggtgccgacgcgctctacgagaccgatggctccgacgcgggtgccgccgacagc
ggccagcccgaggcgccggatgcggacgaaaagccctaccgggcgatggaccatgcctcg
gatggcgacgacgagatcgaatccgtggccgacgaggatgtggccgaggagatccctgcg
cccaggaagccccgctcgcgccgctacaagatccaggaagtcatcaaggtgcgccagatc
atgctggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacctat
ctcagcctcgccgggcgctactgcgtgctgatgcccaacaccgcgcgcggcggcgggatc
tcgcgcaagatcacccaggccgccgaccgcaagaagctgaaggagatcgcctccgagctc
gaagtgccggaaggcgcgggcctcatcatccgcaccgccggcgccaagcgcaccaagcag
gagatccggcgcgactacgaatatctcctccgcctctgggagcagatccgcgacctcact
ctgaagtcggtcgcgcccgcgccgatctacgaggagggcgacctcatcaagcgcacgatc
cgcgacctcttcaaccgcgagatcgaggaagtgctggtcgagggcgagacgggctaccgc
accgccaaggacttcatgcggatgatcatgccggcccacgcccggcaggtgatccgctac
gatgagccgatgccgctcttcgcgcgctatcaggtggaaagctacctctcgggcatgttc
aacccggtggtccagctgaaatccggcggctacatcgtcatcggtgtgaccgaggcgctg
gtcgccatcgacgtgaactccggccgggccaccaaggaaggctcgatcgaggagaccgcg
ctcaagacgaacctcgaggccgccgaagaggtggcgcgccagctgcggctgcgcgacctc
gccggtctgatcgtcatcgacttcatcgacatggaagagcgcaagaacaacgccgccgtc
gagaagcgcctgaaggacaagctgaagaccgaccgcgcccggatccaagtcggccgcatc
tcgggcttcggcctgatggagatgagccgccagcgcctccgtccgggaatgctcgaatcg
accacccagccctgcgcccactgccacggcacgggtctgatccggtcggacgacagcctc
gcgcttcaggtcctgcgccagctcgaggaagagggcacccgcaagcgctcgaaggaagtg
cttcttcgcgcaccgattgcggttgtcaacttcctgatgaacagcaagcgcgagcatatc
gccatgatcgaggcgcgctacggcatggccgtgcgtgtcgaggccgatccctcgctctcg
agccccgattatgtgatcgagaagttcaagaccgcgacccgtgtggtgccggaagccgtg
aaggtgatctcgggcagcgccgatctgatgggtgcgccggtggacgagcccgaggacgac
tgggtcgaggaagagcccgagatcgtcgaggaggccgaggaggtcgcggacgcggccgag
gcggcgccctcggaggggcagccgaagaagaagcgccgtcgtcggcggcggcgtcggaac
ggcgtgaacggcgccaacggctccgacgcgcaggagaacggcgacgagggcgacgagtcg
gacgaggatgagggcgatgccgccgacgagccggaggccgtcgaagccgccgccgccgtc
ccggagctggcgcccgaggccgtcgtgagcgcgcccgagccggccgcggccgagccggag
ccgacccccgccgatccggtggccgcaccggccgccgaggagcccgcggccccgcgcaag
cgcacccggacgcggaagccgaaggtgacggaggaggctccggccgaagccgccgcggag
gcgcccgcggaggcgcccgctgctgaagcgcccgccaaggaggcgaagaagccgcgcacc
cgcacgagccgcagccgcaagacggccgccgcagccgaggccgttcccgcggtcgaggtg
gccgtgacggtcgacgagacgccggcggaagcctcgcttgaaatcgcccggacgaccgag
gcggccccggagacgacgccgaggcgcccgccgccgaagcccccgccgccgaagcgcctg
tggccgaaacgcctgcgccgcagcccgagccggtggccgaggaggcgggcgagggcgagg
acaacaagcccaagcgccgcggctggtggtcgatcggccgctgatctccagagattgaca
caggggcgcctccgggcgcccctgttcgttcccgcaggagccgatgggaggctcgcgcgg
tggccgaccgcccgagcaggcgggattccggggcttcgcgacctgcggtga
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