Cereibacter sphaeroides 2.4.1: RSP_2534
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Entry
RSP_2534 CDS
T00284
Name
(GenBank) putative hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rsp
Cereibacter sphaeroides 2.4.1
Pathway
rsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSP_2534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsp03019
]
RSP_2534
Messenger RNA biogenesis [BR:
rsp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RSP_2534
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ABA78693
UniProt:
Q3J3E1
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All DBs
Position
1:1176027..1177700
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AA seq
557 aa
AA seq
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MSANRLIYLPLGGAGEIGMNCYVYGYGPEGRERLIVVDLGVTFPDMETTPGVDLIMADIS
WLEERQDRIEAIFITHAHEDHIGALGHLWPRLKAPVYARRFTGTIGRLKFEEHGLPADQI
TIVGARPEVVEAGPFEVQFVPVSHSIPESSALVIDTPAGRIVHSGDFKLDRSPVVGEPWA
DETFRAIAAERPVKALMCDSTNVFSLHPGRSEATLGDPLKALIAGARGMVVATTFASNVA
RLKTLAEAAAAADRSICLLGRAMRRMVTAAQESGVLTSFPAVVSPEEAAEIPRQNLMLIV
TGSQGERRAASAQLARGKYLGLEMKEGDLFLFSSKTIPGNERGVLRIVNSFSEMGVDVVD
DAGGLYHVSGHANRPDLEQVHTLLWPEMLVPMHGEHRHLREHARIAAAKGITADVITNGM
MVDLTRGLQVAEYIDTGRSYLDGSVLIGARDGVVRDRIRMALNGHVLTTVILDEQDAPLG
DAWVELMGLPERGRTGRALSETLEEELSDYLGRAGAKVLRDDDKLDEAIRRMVRQVAMEE
IGKKPEVTVVVSRLMEG
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcaaaccggctgatctatctgccgctcggcggagcgggcgagatcgggatgaac
tgctacgtctacggctacgggccggaggggcgcgagcggctgatcgtcgtcgatctcggc
gtgaccttcccggacatggagacgacgcccggcgtcgatctcatcatggccgacatctcc
tggctcgaagagcgtcaggatcggatcgaggcgatcttcatcacccatgcccacgaggac
catatcggcgcgctcggccatctgtggccgcggctgaaggcgccggtctatgcccgccgt
ttcaccggcaccatcggccggctgaagttcgaagagcacgggctgcccgccgaccagatc
accatcgtgggcgcgcgccccgaggtggtcgaggccggccccttcgaggtgcagttcgtg
cccgtctcgcactcgatccccgaaagctcggcgctggtgatcgacacgcctgcgggccgg
atcgtccattcgggcgatttcaagctcgaccgctcgccggtggtgggcgagccctgggcg
gacgagaccttccgcgccatcgcggccgagcggccggtgaaggcgctgatgtgcgactcg
accaacgtcttctcgctccatcccggccggtcggaggccacgctgggcgacccgctgaag
gcgctgatcgcgggcgcccgcggcatggtggtggccaccacctttgcctcgaacgtggcg
cggctgaagacgctggccgaggctgcggccgcggcggaccgctcgatctgccttctgggc
cgcgccatgcgccgcatggtgacggcggcacaggagagcggcgtgctgacgagcttcccc
gctgtcgtgagccccgaggaggcggccgagatcccgcgccagaacctgatgctgatcgtg
accggcagtcagggcgagcggcgcgcggcctccgcccagcttgcgcgcgggaaatatctc
gggctcgagatgaaggagggcgacctcttcctcttctcctccaagaccatccccggaaac
gagcgcggcgtgctgcgcatcgtcaactccttctccgagatgggggtggatgtggtggac
gatgcgggcgggctctatcacgtctcgggccacgctaaccgcccggatctcgagcaggtg
catacgctgctctggcccgagatgctggtgccgatgcatggcgagcaccgccatctgcgc
gaacatgcgcggatcgcggcggccaagggcattacggcggatgtcatcaccaacgggatg
atggtggatctgacgcgcgggctgcaggtggcggaatatatcgacaccggccgcagctat
ctcgacggttcggtgctgatcggggcgcgcgacggggtggtccgcgaccggatccgcatg
gcgttgaacggccatgtgctgacgacggtgatcctcgatgagcaggacgcgccgctgggc
gacgcctgggtggagctgatgggcctgcccgagcgcggccgcaccggccgggcgctgtct
gagacgctggaagaggagctgtccgactatctcggccgggcgggggccaaggtgctgcgc
gacgacgacaagctcgacgaggcgatccgtcggatggtgcgtcaggtcgcgatggaagag
atcggaaagaagccggaagtgacggtggtcgtcagccggttgatggaaggctga
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