Cereibacter sphaeroides 2.4.1: RSP_3553
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Entry
RSP_3553 CDS
T00284
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rsp
Cereibacter sphaeroides 2.4.1
Pathway
rsp03030
DNA replication
rsp03430
Mismatch repair
rsp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSP_3553 (dnaE)
03430 Mismatch repair
RSP_3553 (dnaE)
03440 Homologous recombination
RSP_3553 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsp03032
]
RSP_3553 (dnaE)
03400 DNA repair and recombination proteins [BR:
rsp03400
]
RSP_3553 (dnaE)
Enzymes [BR:
rsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RSP_3553 (dnaE)
DNA replication proteins [BR:
rsp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RSP_3553 (dnaE)
DNA repair and recombination proteins [BR:
rsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RSP_3553 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF655
Motif
Other DBs
NCBI-ProteinID:
ABA81154
UniProt:
Q3IWD0
LinkDB
All DBs
Position
2:complement(643063..646554)
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AA seq
1163 aa
AA seq
DB search
MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG
AGIQPIVGCQVSVAYETAALGERPKPPAPVVLLAQTETGYGNLMKLSSCLYLGKEGALPQ
VTPSELERHAEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYVELQRHPG
EGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEGAYVDQVA
PRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKRPPILPRFADDEVEEL
RRQAKEGLAARLAVIPHAAPVEDYEARLSFELGIIEQMGFPGYFLIVADFIKWGKANGIP
VGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPDFDIDFCMDRREEVIRY
VQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPVEGVKPVSIQKAL
ADEPRLREAAKTEEVVKRLLDYGMQIEGLLRNASTHAAGVVIGDRPLDELVPLYQDPRSD
MPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRPLHMAADGRVLYDPPPGA
ENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGP
MENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQIAQVMGGYTLGGADLLR
RAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKFANYGFNKSHAAAYAVVS
YQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRTVAPCVNASLATFTVRDG
AVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKRIGKRPLEMLARAGAFDA
LDRNRARVFEALDALVAYSAAIHEALNSSQVSLFGEAGADIPEPRLPSRDDWLPVERLAQ
EHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMVAKLAGAVSSRQEKKSAKG
NRFAFVQLSDPTGLYECTVFSDVLEQARDLLEPGGHVVLTVEATLEGDSLKLLARGVSPI
DAVAADAGAMSLRVHLDRAEAAASVAALLARAQGRARAPVRICVRDPSGGQEIDIELGQD
FAVSPQIRSALRAVPGVEMVEEI
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgctccccgattcatccatctgcgcgtccataccgaatattcgctgctcgag
ggcgcggtgccggtgaagaagctgatcggcctctgcacggccgccgccatgcccgccgtg
gcggtgacggataccaatgccatgttcgccgcgctggaattctcggtgctggccagcggc
gcagggatccagcccatcgtcggttgtcaggtctcggtcgcctacgagacggcggcgctg
ggcgagcggccgaagccgcccgcgccggtcgtgctgctggcccagaccgaaacgggctac
ggcaacctcatgaagctctcctcctgcctctatctcggcaaggagggtgcgctgccgcag
gtgacgccgtccgaactcgagcggcatgcggaggggctgatctgcctgaccggcgggccg
gacgggccggtgggccggcatctgcgcgaggggcagcgggcgaaggccgaggcgctgctg
ggccgcctcgccgcgatctatcccgggcggctctatgtcgagttgcagcgccatccgggc
gagggcgggcggctgaccgaggccgagcgcgcgaccgaacccgggcatgtcgagctggcc
tatgcgatgggcctgccgctcgtggccacgaacgacgtctattttccgaagcccgagatg
tatgaggcgcacgatgcgctgatctgcatcgccgaaggggcctatgtcgatcaggtggcg
ccgcggcggcggctcacgccgcagcattacttcaagtccgaggccgagatggtcgcgctg
ttcgccgacctgcccgaggcggtggagaacaccgtcgagatcgcgcgccgctgcgccttc
aaggcggccaagcgcccgccgatcctgccgcgcttcgccgatgacgaggtggaggagctg
cggcggcaggccaaggaagggctggccgcgcgcctcgccgtgatcccccatgcggcgccc
gtcgaggactatgaggcgcgcctctccttcgagctcggcatcatcgagcagatgggcttt
ccgggctacttcctgatcgtggccgacttcatcaagtgggggaaggccaacggcatcccg
gtgggaccgggacgggggtcgggcgcgggctcgctcgtggcctatgcgctgacgatcacc
gacctcgaccccttgcgttaccagcttctcttcgagcggtttctgaaccccgagcgggtg
tcgatgccggacttcgacatcgacttctgcatggaccggcgcgaggaggtgatccgctac
gtccaggagaaatacggccgcgacaaggtggggcagatcatcaccttcggcgcgctcctc
tcgaaggccgccgtccgcgacgtggggcgcgtcctccagatgccctacgggcaggtggac
cggctgtcgaagatgatcccggtcgagggggtgaagcccgtctcgatccagaaggcgctg
gccgacgagccgcggctgcgcgaggccgcgaagaccgaggaggtggtgaagcggcttctg
gactacgggatgcagatcgaggggcttctgcgcaacgcctcgacccatgccgcgggcgtg
gtgatcggcgaccggccgctcgacgagctggtgccgctctatcaggatccgcgctcggac
atgccggctacccagttcaacatgaaatgggtggaagccgcggggctggtgaagttcgac
ttcctcggcctcaagacgctgacggtgatccagaacgcgatcgatctgatccgcggcacg
gggcggcccctgcacatggctgcggacgggcgggtgctctacgatccgccgccgggagcc
gagaacgacatcgggcatatcccgctcgaggacaaggccacctacgagctctatgcgcag
gccaagaccgtggcggtgttccaggtcgaaagctcgggcatgatggatgcgctgcgacgc
atgaagcccacctgcatcgaggatatcgtggcgctggtggcgctttaccggccggggccg
atggagaacatcccggtctattgcgaggtgaagcacgggctgcgcgatctcgagagcctg
catccgaccatcgacccgatcctgaaggagacgcagggcatcatcgtctatcaggaacag
gtgatgcagatcgcgcaggtcatggggggctatacgctcggcggcgcggaccttctgcgc
cgcgccatgggcaagaagatcgccgaagagatggccaaggagcgcccgaagttcatcgaa
ggcgcaaagaagacccacggaatcgacgcgaagaaagccggcgaagtcttcgacctgctt
gagaaattcgcgaactacggcttcaacaagtcccacgccgccgcctatgcggtcgtgagc
taccagaccgcctggctgaaggcgaaccatccggtcgagttcatggccgcggtgatgaac
tgcgatatccacctgaccgacaagctcgccgtctacaagcgcgaggtggacaagctcggc
atccgcacggtggcgccctgcgtgaacgcctcgctcgccaccttcacggtgcgcgacggc
gcggtggtctatgcgctcggcgcgctgaagaatgtgggtgtcgaggcgatgcggctcatc
gtcgaggcccgcggcgaccggcccttcgccacgctcttcgacatggcgcggcgggtggag
ctgaagcggatcggcaagcgtcctctcgagatgctggcgcgcgccggggctttcgacgcg
ctcgaccgcaaccgtgcccgggtgttcgaggcgctggatgcgctggtggcctattccgcc
gccattcacgaagcgctaaattcgagccaggtgtcgctgttcggcgaagcaggggcggac
atccccgagccgcggctgccgtcgcgcgacgactggctgccggtcgagcgactggcgcag
gagcatcaggcgatcggcttctatctctcgggccatccgctcgacgattacatgggggcg
ctgaagcggcgcaacgtcaccacgcttgccgcgctgaccgatctggcgcagcgggggccc
atggtggccaagctcgccggtgccgtctcgtcgcggcaggagaagaagtcggccaagggc
aaccggttcgccttcgtccagctttcggatccgacggggctctacgaatgcaccgtcttt
tcggatgtgctcgagcaggcgcgcgacctgctggagccgggcggccatgtggtgctgacc
gtcgaggccacgctcgagggcgacagtctgaagctcctcgcccgcggggtctcgccgatc
gatgcggtggcggccgatgcgggcgcgatgagcctgcgcgtccatctcgaccgtgccgag
gccgcggcctcggtggcggcgctgctggcccgtgcgcagggccgcgcccgggcgccggtg
cggatctgcgtccgcgatccgtcgggcgggcaggagatcgacatcgagctcggtcaggat
ttcgccgtctcgccgcagatccgcagcgcgctccgcgccgtgccgggtgtggagatggtc
gaggagatctag
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