Cereibacter sphaeroides ATCC 17025: Rsph17025_0017
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Entry
Rsph17025_0017 CDS
T00512
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rsq
Cereibacter sphaeroides ATCC 17025
Pathway
rsq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rsph17025_0017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsq03019
]
Rsph17025_0017
03400 DNA repair and recombination proteins [BR:
rsq03400
]
Rsph17025_0017
Enzymes [BR:
rsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rsph17025_0017
Messenger RNA biogenesis [BR:
rsq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rsph17025_0017
DNA repair and recombination proteins [BR:
rsq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rsph17025_0017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
Rhodanese
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABP68929
UniProt:
A4WNG5
LinkDB
All DBs
Position
complement(25677..27722)
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AA seq
681 aa
AA seq
DB search
MPAPRDLLHSVFGFPDFRPGQEEIVEAVRAGRNTLAIMPTGGGKSLCYQLPALCREGVTL
VVSPLIALMRDQVRSLREAGVEAGALTSGNTEAETEEVFRALDEGRIKLLYMAPERLASA
GAFALLRRVGVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALDVPLAAFTATADAETQE
EIVARLFDGAPPATFLRGFDRPNIHLAFAVKSSPRQQILSFAAARKGRSGIVYCATRAKT
ETLAQALREAGHSACHYHGGMEADDRRAVEIRFQQEDGLIVVATVAFGMGIDKPDIRWVA
HADLPKSIESYYQEIGRAGRDGAPAETLTLYGPDDIRLRRAQIDEGLAPPDRKAADHARL
NALLGLAEATGCRRQVLLGYFGEASQPCGTCDLCERPAELFDATEPVRKALSAILRTGEW
FGTGHLIDILTGNATQKVRDRGHDQLPTFSVGRDLSRPAWEAVFRQMMGRDLVRPDTERH
GALKMTEAARPILRGEEQITLRRDTVKSAAARPQARALVSEEDAPLLSALKAKRRALAEA
AGVPAYVIFTDRTLIEMAERRPQSLDDMAGITGVGAKKLDSYGATFLEVITGEAEAAMHP
QHRRLAGRNSAELFDRLAEVQVALMRGEDGTGKPMSLPQSTLRRIAEARPSTLADLDRVG
DLGAQKMERFGDAFLDVLREA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgccgcgtgaccttctccattccgtcttcggcttccccgacttccgtccgggg
caggaagagatcgtggaggccgtgcgcgccggtcgcaacacgctcgccatcatgcccacg
gggggcggcaagtcgctctgctaccagttgcccgcgctctgccgcgagggggtgacgctc
gtcgtctcgccgctgatcgcgctcatgcgcgaccaggtgcgctcgctgcgcgaggcgggg
gtcgaggcgggcgccctgacctcgggcaacaccgaggccgagacggaggaggtgttccgg
gcgctcgacgagggccggatcaagctgctctacatggcgcccgagcggctcgcctcggca
ggcgccttcgcgctgctgcgtcgggtgggcgtcagcctcatcgcggtggacgaggcccat
tgcgtcagccagtggggccacgacttccgccccgactacctgcgcatcggcgaattgcgc
cgcgcgctcgatgtgccgcttgcggccttcaccgcgacggccgacgccgagacgcaggaa
gagatcgtcgcgcgcctcttcgacggcgcgcctcccgcgacgttcctgcgcggcttcgac
cggccgaacatccacctcgccttcgccgtcaagtcgagccctcggcagcagatcctgtcc
ttcgcggccgcccgcaagggtcgctcgggcatcgtctattgcgcgacgcgggccaagacc
gagacgctcgcccaggcgctgcgcgaggcgggccattccgcctgccactaccacggcggg
atggaggccgacgatcgccgcgccgtcgagatccgcttccagcaggaggacgggctgatc
gtggtggcgacggtggccttcgggatggggatcgacaagccggacatccgctgggtggcc
cacgccgacctgcccaagtcgatcgagagctattaccaggagatcggccgcgccggccgc
gacggcgccccggccgagacgctgaccctctacggacccgacgacatccgcctgcgccgc
gcccagatcgacgaggggctggccccgcccgaccgcaaggccgccgatcacgcccggctg
aacgcgcttctggggctggccgaggccaccggctgccggcggcaggttctgctcggctat
ttcggcgaggcgtcgcagccctgcggcacctgcgatctctgcgagcgtccggccgagctg
ttcgacgcgaccgagcccgtgcgcaaggcgctctcggcgatcctgcgcacgggcgaatgg
ttcgggaccggccatctgatcgacatcctgaccggcaatgcgacccagaaggtgcgcgac
cgtgggcacgaccagcttcccaccttttcggtcggccgcgatctgtcccgcccggcgtgg
gaggcggtgttccggcagatgatggggcgcgacctcgtgcgccccgacaccgaacgccac
ggcgcgctgaagatgaccgaggccgcgcgccccatcctgcgcggcgaggagcagatcacg
ctccgccgcgacacggtgaaatccgccgcggcacggccgcaggcccgggcgctggtctcg
gaagaggatgcgccacttctctccgcgctgaaagccaagcgccgggcgctggccgaggcc
gcgggcgtgccggcctatgtgatcttcaccgaccgaaccctgatcgagatggccgagcgc
cgcccgcagagcctggatgacatggccggcatcacgggggtcggcgccaagaagctggac
agttacggcgcaaccttccttgaagtcatcaccggcgaggccgaggccgccatgcatccc
cagcaccggcgcctcgcagggcgcaactcggccgagctgttcgaccggctggccgaggtt
caggtcgcgctgatgcggggcgaggacggaacgggcaagcccatgagcctgccgcagagc
acgctgcgccggatcgccgaggcgcggccctcgacgctggcggatctcgaccgcgtcggc
gatctgggcgcccagaagatggagcggttcggcgacgccttcctcgacgtgctgcgcgag
gcctga
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