Cereibacter sphaeroides ATCC 17025: Rsph17025_1657
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Entry
Rsph17025_1657 CDS
T00512
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
rsq
Cereibacter sphaeroides ATCC 17025
Pathway
rsq02020
Two-component system
rsq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rsq00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Rsph17025_1657
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Rsph17025_1657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsq03021
]
Rsph17025_1657
Transcription machinery [BR:
rsq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Rsph17025_1657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_23
HTH_3
LacI
HTH_Crp_2
Sigma70_r4
GSPE_N1E
Phage_CII
HTH_Tnp_ISL3
HTH_38
DUF6171
HTH_31
HTH_AsnC-type
Motif
Other DBs
NCBI-ProteinID:
ABP70550
UniProt:
A4WT36
LinkDB
All DBs
Position
complement(1697725..1699050)
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AA seq
441 aa
AA seq
DB search
MQLYTAQSFAQRQSLVVTAQLQQAICLLQMPNAELSSFIETQSEENPFLELRLPPAPAPS
SALPRSQAAAGDDWDRVAGLAADPGPSLYVHVTAEIARLGLTAEESAAASVFLDALEPWG
WLGQPLELLAPRAGLSLEAAERLLAKLHRIEPAGLFARSLAECLRLQASEQGLLTPLFAA
VLDHLSLLAAADLRGLCRACGCGMEELKAVLRQLRGLNPKPGALFDAAPSPQRPPDLLVS
PGPDGWRVDLNRSTLPTVVVRADTAQDFAGSAAPYVGERLSVARWLARAVEHRNQTTLKI
GAEVVRRQRGFLEEGPARMEPMTLREVADAVGVHESTVSRVSSGLMIATPQGTFPLKSFF
TAALSAREGDTAGSAAAVRHRVRQLVQAESPDDPLSDDAIARIISDEGVTLARRTVAKYR
EQLNIPSSVQRRRQALVTGAL
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgcagctttataccgctcagagcttcgcgcagcgtcagtcgctcgtcgtgaccgcgcag
ttgcagcaggcgatctgcctgctccagatgcccaacgcggaactgtcctcgttcatcgag
acacagtccgaggaaaacccgttcctcgagctgcggctgcccccggcgcccgcgccgtcc
tcggcgttgccccgcagccaggcggcggcgggcgacgactgggaccgtgtggcgggcctt
gccgccgatccggggccgtcgctctatgtccatgtcaccgccgagatcgcccggctgggt
ctcacggccgaggagagcgccgccgcctcggtctttctggatgcgctcgaaccctgggga
tggcttggccagccgctcgagctgctggccccgcgcgcgggtctctcgctcgaggcggcc
gagcggctgctggcgaagctgcacaggatcgaaccggccggtctcttcgcccgctcgctc
gccgagtgcctgcggctgcaggccagcgagcaggggcttctgacgccgctctttgccgcc
gtgctcgaccatctgtcgctgctggccgccgccgacctgcgcgggctctgccgcgcctgc
ggctgcggcatggaggagctgaaggccgtcctgcgccagctgcgcgggctcaatcccaag
ccgggtgcgctgttcgatgccgccccctcgccgcagcgcccgccggatctgctggtcagc
cccggccccgatggctggcgcgtggatctcaaccgctcgacactgcccacggttgtggtg
cgcgccgacacggcgcaggacttcgccggaagcgccgcgccctatgtcggcgagcggctc
tcggtggcccgctggctggcccgcgcggtcgagcaccggaaccagacgacgctcaagatc
ggtgcggaagtggtgcgccggcagcgcggcttcctcgaggagggcccggcgcggatggag
ccgatgacgctgcgcgaggtggccgatgcggtgggcgtgcacgaaagcacggtgagccgc
gtgagctccggtctgatgatcgccacgccgcagggcacctttccgctgaagtcgtttttc
acggccgctctctcggcgcgcgagggggacacggccggttcggccgcggccgtccgccat
cgcgtgcgccagctggtccaggcggagtcgccggatgatcccctgagcgacgatgccatc
gcccgcatcatctcggacgagggcgtgacgctggcccgccgcacggtggccaaataccgc
gagcagctcaacattccgtcctcggtccagcgccggcggcaggcgctggtgacgggcgcg
ctctag
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