Cereibacter sphaeroides ATCC 17025: Rsph17025_3111
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Entry
Rsph17025_3111 CDS
T00512
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rsq
Cereibacter sphaeroides ATCC 17025
Brite
KEGG Orthology (KO) [BR:
rsq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsq03019
]
Rsph17025_3111
Enzymes [BR:
rsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Rsph17025_3111
Messenger RNA biogenesis [BR:
rsq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Rsph17025_3111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
HA2_N
ResIII
AAA_19
AAA_30
nSTAND3
AAA_11
LAL_C2
Motif
Other DBs
NCBI-ProteinID:
ABP71995
UniProt:
A4WX81
LinkDB
All DBs
Position
complement(3188959..3191385)
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AA seq
808 aa
AA seq
DB search
MTETLPIDSALPALVEALSNRRMVVLQAPPGAGKTTRVPLAILDAGLTGERIVMLEPRRL
AARAAAERMAATLGEPVGQTVGYRIRGEARVSPASRIEVVTEGILTRMIQDDPSLEGIGA
LIFDEFHERSLNADLGLALALEVRGALREDLLLVAMSATLDAGPVADLMGGAPVVTSEGR
AFPVETRWLARPLAPGARLEPEVAALVRRAAAETEGDILVFLPGEGEIRRVQGMLDLPGV
RVAPLFGALDFAAQRAALEPGPERRIVLATSIAETSLTIPGVRVVVDAGRARRARFDPSS
GMSRLVTERVTRAETDQRRGRAGRVAEGICYRMWTRGEEGALAAFPPAEIEAADLTGLAL
ELAVWGSADLPFLTPPHPGVLAEARGLLERLGALEDGRITAHGKRLARLPLHPRLGHMLT
VAGPSAAPLAALMADRDPVKGPPDLALRLAALADPKRFPDEHPHEVNRTALARIRDEARR
LSRAVATPRAGLSVGQMAALAYPDRVGLRRKGEAPRWVLSGGKGAAMEPGLPLSGARLIV
ATDLDGDAREAKVRQAAPIPESELRQLFAPQIRWRTVCDWSRREGRVVARRQETFGALVL
DDRTWPEVPPEALARAAFEGLRQIGLPWSEPARRLRARIALLHAEGAEMPDTSDAALLAD
PEWLLPYLGSRRTEAELRALDLTEPLRALLGWEGVQLLDRLAPAHFETPLGRKVPIDYEG
EAPGIEIRLQEMFGVTVHPTVGPKRLPLRITLLSPGQRPVQVTMDLPGFWASSYADVRRD
MRGRYPRHPWPEDPTVAEPTLRAKPRGT
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagacgctgccgatcgactctgcgctgcccgccctggtggaggcgctctccaat
cgccggatggtggtgctccaggcgccgcccggtgcgggcaagacgacgcgcgtgccgctt
gcgatcctggatgccgggttgaccggggaacggatcgtcatgctcgagccgcggcgtctt
gcggcgcgggcggccgccgagcggatggcggccacgctcggcgagccggtgggtcagacc
gtcggctaccgcatccggggcgaggcgcgcgtctcgccggccagccgcatcgaggtggtg
accgagggcatcctcacccggatgatccaggacgatccctcgctcgaagggatcggcgcg
ctgatcttcgacgagttccacgagcgcagtctgaatgcggatctgggacttgcgctggcg
ctcgaggtgcggggcgcgctgcgcgaagacctgctgctggtcgcgatgtctgcaacgctc
gacgcggggccggtggccgatctgatgggaggggcgcccgtcgtgacgtcggaggggcgc
gccttcccggtcgagacacggtggctggcgcgccccctcgcccccggtgcgcggctcgag
cccgaggtggcggccctggtgcgacgggccgcagccgagaccgagggcgacatcctcgtc
ttcctgccgggcgagggcgagatccggcgcgtgcagggcatgctcgacctgccgggggtg
cgcgtggcgccgctctttggtgcgctcgacttcgcggcccagcgcgcggcgctcgagcca
ggcccggagcgtcggatcgtgctggccacctcgatcgccgaaacctcactgaccattccc
ggcgtgcgggtggtggtcgatgccggccgcgcacggcgggcgcggttcgatccgagttcc
ggcatgtcgcggctggtgaccgagcgggtgacgcgggccgagaccgaccagcgccgcggc
cgcgcgggccgtgtggccgagggcatctgctaccggatgtggacgcggggcgaggaaggg
gcactggcggccttcccgccggccgagatcgaggcggcggatctgaccgggcttgcgctc
gagctggcggtctggggcagcgccgacctgccgttcctgacgccgccccatcccggcgtg
ctggccgaggcgcgcgggctgctcgagcggctgggcgcgctggaggatggccggatcacc
gcccatggcaagcggctggcgcgtctgccgctccatccccggctgggccacatgctgacg
gtggcggggccctccgccgcgccgcttgccgcgctgatggccgaccgtgacccggtgaag
gggccgcccgatctggcgctgcgtctggcggcgctggccgatccgaagcggttcccggac
gagcatccgcacgaggtgaaccgcacggccctcgcccgcatccgggacgaggcccgccgg
ctctcccgcgcggtggcgacgccccgcgcgggtctgtctgtagggcagatggcggcgctg
gcctatcccgaccgggtcggcctgaggcgcaagggcgaggcgccgcgctgggtgctctcg
ggcggcaagggcgcggcgatggaaccgggcctgccgctctcgggcgcgcggctgatcgtg
gcgaccgatctcgacggcgacgcgcgcgaggcgaaggtgcggcaggcggcgccgatcccg
gaatccgagcttcgccagctctttgcgccacagatccgctggcgcacggtctgcgactgg
tcgcgccgcgaaggccgcgtcgtggcgcggcggcaggaaaccttcggcgcgctggtgctc
gacgaccggacctggcccgaagtgccccccgaggcgctggcccgcgcggccttcgagggg
ctgcgccagatcggcctgccctggagcgagcccgcccgcaggctgcgcgcccgcatcgcc
ctcctgcacgccgagggggccgagatgcccgacacatccgacgcggcgctgctggccgat
cccgagtggctgctgccctacctcggctcccgccgcaccgaggccgagcttcgcgccctt
gacctgaccgagccgctgcgcgccctcctcggctgggagggggtgcagcttctcgaccgg
ctggcgcccgcgcatttcgagacaccgctcgggcgcaaggtgccgatcgactacgaggga
gaggcgccgggaatcgagatccggctgcaggagatgttcggcgtgacggtgcacccgacg
gtgggccccaaaaggctgcccttgcggatcaccctgctgtcaccgggccagcggccggtg
caggtgacgatggatcttccgggcttctgggcaagttcctatgcggatgtccgccgcgac
atgcgcggtcgctacccgcgccatccctggcccgaggacccgacggtggccgagcctacg
ctgcgggccaagccgcgcggcacctga
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