Roseivirga spongicola: T7867_08260
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Entry
T7867_08260 CDS
T09626
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rsr
Roseivirga spongicola
Pathway
rsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T7867_08260 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsr03019
]
T7867_08260 (recQ)
03400 DNA repair and recombination proteins [BR:
rsr03400
]
T7867_08260 (recQ)
Enzymes [BR:
rsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T7867_08260 (recQ)
Messenger RNA biogenesis [BR:
rsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T7867_08260 (recQ)
DNA repair and recombination proteins [BR:
rsr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
T7867_08260 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
RecQ-1-like_HTH
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
WPZ12103
LinkDB
All DBs
Position
complement(1877665..1879863)
Genome browser
AA seq
732 aa
AA seq
DB search
MVSVEVLRSKLKEVFGYDQFRGNQEKIILNLLARKNTFVIMPTGAGKSMCYQMPAIVQEG
TAIVISPLIALMKNQVDQMNAVGVNARFLNSTLSKSEINRIKKATLAGELKLLYIAPESL
TKEENVDFLRQANISFAAIDEAHCISEWGHDFRPEYRRIKSIINHLGDIPIIALTATATP
KVQLDIQRNLQMEDADLFKSSFNRENLYYEVRPKKGIKKQLIKFIRENQGKSGVIYCLSR
KKVEEIAQFLQVNGFKAAPYHAGFDPAVRMKNQDDFLNEEVDVIVATIAFGMGIDKPDVR
FVIHYDVPKSLEGYYQETGRAGRDGLEGQCVMFYSYNDILKLEKFNKDKPVTEKENAKIL
LEEMSSYAESAVCRRKQLLHYFGEEYDDTACKKSGMCDNCRYEREKYDGQEYVKTVVQAV
EQTGQRFGIGHLVSVIRGSSNQYVKSYGHDKLPVYGVGKSEDESLWKSIVRQTLLNEFVE
KDIENIGTLKLSKKGLNFLEKPYYVEFTKDLDYSDVDQTEEESNETPASPNAGNSFDKVL
FDLLKAERKKIAKEKDLPPYVIIQDPSLQEMATTYPTTDEALANVNGIGMGKVQKFGQSF
LKIIKQYVKDNEIDIEDVVVIKSSGNKSKNKIYIIQQVDRKIDLEEVAEQKGWSMSTLID
EMEIICFAGTRLNLDYYLESFIDEDLQADIIDYFLDAESDSIADALDEFDGEDITEDDMR
LMRIKFLSEHAN
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggtaagtgtcgaagtcttaaggtcgaaactcaaagaagttttcggctacgatcagttc
aggggaaatcaggaaaaaataattctaaacttattagcaaggaaaaacacctttgtgatt
atgcccacaggtgcgggtaaatctatgtgttaccagatgccagctattgtgcaagaggga
acggccattgtcatctctccgctgatagctctgatgaaaaatcaggtggatcagatgaat
gctgtaggtgtaaatgctagattcctaaattccaccctttcaaaatcagaaattaataga
attaaaaaagccaccttagcgggtgagctcaagctactttacatagctccagaatcattg
accaaagaagaaaacgttgactttctaaggcaagccaacatctcttttgcagccatcgat
gaagcgcattgtatttcggaatggggtcatgatttcaggccagaataccgaagaatcaag
tctatcatcaatcatttaggtgatattccaattattgcgcttactgcaacagctactcca
aaagttcagctagatattcagagaaaccttcagatggaagacgcagacttattcaagtct
tctttcaacagagaaaacctctattatgaggttcgacctaaaaagggaatcaagaaacag
ctcattaagtttattcgagagaatcaaggcaaatcgggcgttatctactgcttgagcaga
aaaaaggtagaagaaattgcccagttccttcaagtgaatggctttaaagcagcaccttat
cacgcaggattcgatcctgccgtgagaatgaaaaatcaagacgatttcttgaatgaagaa
gtagatgtgattgtggcaaccatcgcattcggaatgggaattgacaaaccagatgttcga
ttcgtaatccattacgatgtgccaaagtctttagaaggctactatcaagaaactggtaga
gcaggtcgagatgggcttgaaggtcagtgcgtcatgttctacagctacaatgatattctg
aagctagaaaagttcaataaagacaagcctgtaaccgaaaaggagaatgcaaaaattctt
ctggaggaaatgagttcttatgccgaatcggctgtatgcagaagaaagcagctgctccac
tattttggagaggagtatgacgacactgcctgcaagaaatctggcatgtgcgacaattgt
cgatatgaacgagaaaagtacgatggacaggagtatgtaaaaaccgttgttcaggcagta
gaacaaaccggtcaaaggtttggcattggtcacttggtcagtgtaattcgaggctctagc
aatcaatatgtaaaaagttatgggcacgataagttgcctgtgtatggtgtgggaaaatct
gaggatgaaagtctttggaagtctatagttcgtcaaaccttacttaacgaatttgttgaa
aaagacattgagaacattggcacactgaaactcagtaaaaaaggcctcaacttcttagag
aaaccttattacgtagaatttaccaaagatttagactatagcgatgtagaccaaaccgaa
gaagaaagcaacgaaacaccggcatctccaaatgcaggcaattcattcgataaagtgctt
ttcgacttactaaaagccgaaagaaagaaaatagcaaaggagaaagacctccctccctat
gtaattattcaggatccatctctacaagaaatggcaaccacctaccctaccaccgatgaa
gcattggccaatgtcaatggtattggaatgggtaaggttcaaaagtttggtcagtccttc
cttaagatcatcaagcaatatgttaaggataatgagattgacattgaagacgtagtagtt
atcaaatcttctggaaataaatccaagaacaagatttacattatccaacaggtggataga
aagatcgacttagaagaggttgccgaacagaaaggatggagtatgtctactcttattgat
gaaatggagataatctgtttcgcaggcactaggctgaatctagactattacttagagtca
tttatagacgaagatctacaggcagacattatagactacttcttagatgcagaatcggac
agtattgcggacgctttagatgaatttgatggtgaagacatcactgaagacgatatgcga
cttatgcgtattaaattcctttcggagcatgcaaattaa
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