Roseivirga spongicola: T7867_09550
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Entry
T7867_09550 CDS
T09626
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rsr
Roseivirga spongicola
Pathway
rsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T7867_09550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsr03019
]
T7867_09550
03400 DNA repair and recombination proteins [BR:
rsr03400
]
T7867_09550
Enzymes [BR:
rsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T7867_09550
Messenger RNA biogenesis [BR:
rsr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T7867_09550
DNA repair and recombination proteins [BR:
rsr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
T7867_09550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HemN_C
GntR
AAA_22
zf-CXXC
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
WPZ12348
LinkDB
All DBs
Position
2165805..2167739
Genome browser
AA seq
644 aa
AA seq
DB search
MNQPIDILKQYWGYDAFRPLQEDIIQAVIEQNDVLALLPTGGGKSICFQVPAMAMDGLCL
VISPLIALMKDQVQQLQKRGISAAALHAGQTKREIDYLLDNAANSDLKFLYCSPERLKTE
IFIERIRKVADRRGVSLIAVDEAHCISQWGYDFRPAYLEIADLREVLPKTPVIALTATAT
PKVREDIQKRLNFKSAKVFTKSFARPNLSYSVRYEEHKERKLLEVLQKIQGSAVVYVSTR
KHAREVAQMLSQYHISADFYHAGLTFQERNIRQEDWIHNRTRVIVSTNAFGMGIDKPDVR
VVAHMDLPDNLEAYYQEAGRAGRDEKKAFAVVICNQADIEHIRRKTEQSLPDLDTLKEVY
QMLGNYYQLAVGSWPQESFDFDFDEFSKRFKRHPLEIFNAVKVLQEQGLITLSESFFSPS
KLKFRIDQRKLYEFQIANAQFDPLIKALLRLHGGELYQNFVSLQENNLSALLGTSVSQLR
ASLKHLSQREIVEYNEQKEKPQLSFLSPRKAPDKLGLDQKALNAKRKLKLDKMESVISYL
HNEEDCRTKLLLAYFGEKDYKNCEVCDNCLNRHKHEKDGYHRVHYKKQILELLAKDEDFN
EDEMVRVLDPSDKTLFLNLLSKLIDHGDLHYNEFGFLKLSRTIK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagccaatagacatccttaaacaatactggggatacgatgcttttcgtccgctg
caggaggatataatacaggctgtaattgagcaaaatgatgtattggccctgctgccaacg
ggtggaggtaaatccatttgttttcaggtgccggccatggcaatggatggattgtgttta
gtgatttctcctcttattgctctgatgaaagatcaggtacagcaactacaaaaacggggg
atttctgctgctgcattacatgcagggcaaaccaaaagagagattgattacctcttggat
aatgcggccaattccgacctcaagtttctctattgttcaccagaaaggttgaagaccgag
attttcattgagcgtattaggaaagtagccgatagacgcggtgtaagccttattgctgta
gatgaagcgcactgtatttctcagtggggctatgatttcagacccgcttatttggaaata
gccgacctgagagaggttttgcccaagacgcctgtaattgctctcactgctacggcaacc
ccaaaggtgcgagaggatattcagaaacgactgaatttcaagtcggccaaggtttttaca
aaaagttttgcacgtcctaatctctcatattctgttcggtatgaagaacacaaagagcga
aagctgctcgaagttctgcaaaagattcagggttctgcagtggtttatgtaagtactaga
aagcatgctagggaagttgctcaaatgctaagtcagtatcatatttcagcggatttctat
catgctggcctaacctttcaggagagaaatattaggcaagaggactggattcacaaccga
accagagtcattgtttctaccaatgcttttggaatgggaatcgataagcccgatgtacga
gttgtggcgcatatggatttgccagataatctggaggcctattatcaggaagctggccgt
gcgggaagagatgagaaaaaggcttttgctgtagtcatttgcaatcaggccgatattgag
catataagacgaaaaacagaacagtctttacccgatttagatacgctcaaggaggtttat
caaatgcttggaaattactaccaattggctgttggtagctggcctcaggaaagtttcgac
tttgattttgatgaattttcgaaacgctttaaacgtcatccactagagatattcaatgcg
gttaaagtgctgcaggaacaggggctcatcacgctctcagagtctttcttcagcccaagt
aaactcaaattcaggattgaccagcgaaagttgtatgagtttcagatagccaatgctcag
ttcgatccgctaataaaagcactactaagacttcatggcggggagctatatcagaacttc
gttagtcttcaagaaaacaacctttctgctcttttgggcacaagtgtaagccaacttcgc
gctagcttaaagcatttgagtcaacgagagattgtagaatacaatgagcaaaaggaaaag
ccacagctgagttttcttagccctaggaaagcccctgataaattaggactcgaccaaaaa
gcactaaatgctaagcgaaagctgaagctagataaaatggagtcggtaatctcttacctg
cacaatgaagaagactgccgaaccaagttgctattggcttattttggagagaaggattat
aaaaactgtgaggtatgcgacaactgtctgaaccgacataagcacgaaaaggacggctat
catcgagttcattacaaaaagcaaatactagagttgttagctaaagatgaggacttcaat
gaagatgaaatggtgagagtgttagacccttcagacaaaacactctttctaaatttgctt
tctaagttgatcgatcatggagatttgcattacaacgaattcggctttctgaaactttca
cgaactatcaaataa
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