Roseivirga spongicola: T7867_09930
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Entry
T7867_09930 CDS
T09626
Name
(GenBank) 3'-5' exonuclease
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rsr
Roseivirga spongicola
Pathway
rsr03420
Nucleotide excision repair
rsr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
T7867_09930
03430 Mismatch repair
T7867_09930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsr03400
]
T7867_09930
Enzymes [BR:
rsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T7867_09930
DNA repair and recombination proteins [BR:
rsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
T7867_09930
MMR (mismatch excision repair)
Other MMR factors
T7867_09930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WPZ08580
LinkDB
All DBs
Position
complement(2260452..2262716)
Genome browser
AA seq
754 aa
AA seq
DB search
MDFLSTLNEPQYEGVVNTEGPAMIIAGAGSGKTRVLTYRIAYLIKEKGVDPFNILSLTFT
NKAAREMRERIEKVAGLNARNLWMGTFHSVFARILRAEADRLGYPSNFTIYDSDDSKSLI
KTIVKEFGLDDKVYKPNVVLNRISGAKNRLVEWSEYINNPLYAADDAAAQKPEMGRIYKT
YCQRCFKADAMDFDDLLLNTNILFRDHLDVLHKYQHRFKYVLVDEFQDTNVSQYLITKKL
SAVSQNIAVVGDDAQSIYAFRGANIENILNFEKDFPDLKVIKLEQNYRSTKNIVEAANSL
IAQNKGQLKKSVWTANNDGNRIELIKSISDNEEGRFVSSTIFEQKAQNNYENKDFAILYR
TNSQSRAIEEALRKSGIPYKIYGGLSFYQRKEIKDLMGYLRFAINTNDEQSFRRIINLPK
RGIGPTSVEKMVVAAFEHDIPLWEVLTNIDMFLPGRAANAVRDFVTLVKSFKIYVDSKDA
FEAASHIAKASGLLKELYDDKTVEGLNRYENVQELLNAMKEFVETPEVEDKTLGAFLQDI
ALLTDADNEDPTDNDFVSLMTIHASKGLEFKNVFIVGLEEDLFPSQMMLSSRADLEEERR
LFYVAITRAQDNLYFSYALSRYRFGRLINCEPSRFIEEVDPNYIFVNTRFGSREPKLGKS
EQPPGFSSSFARNLMSNKKPVAKKPLQYHKPSVDFKPSDTSKLGEGMKVEHPKFGFGKVR
KLDTEGANKKAIVIFEDFGEKTLLLAFAKLRIVE
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggattttctctcaacccttaatgaaccacaatacgaaggtgtagtaaacaccgaaggc
ccagccatgattattgctggagcaggatctggtaaaactcgggtactcacctaccgcatc
gcttacttgataaaggaaaaaggtgttgatcctttcaacatactatcactgacctttacc
aataaggctgcaagagaaatgcgcgagcgtattgaaaaagtggcaggcctgaatgcccgc
aatctttggatgggcaccttccactccgtattcgccagaattctgagagccgaagcagat
cgattgggttacccgagcaacttcaccatttatgatagtgacgattctaaatcgctcatt
aaaactatcgttaaggagtttgggctagatgataaggtttacaaaccaaacgtagtgctc
aaccgtatttcgggagctaaaaaccgactggtagaatggtctgagtacatcaacaatccg
ctttacgcggcagatgatgctgcagctcaaaagccagaaatgggtagaatctacaaaacc
tattgccaacgctgcttcaaagcagacgctatggattttgatgaccttctgctgaacacc
aacatactttttagagatcatttagatgtgctgcacaagtatcaacacagatttaaatat
gtattggtcgatgagtttcaggacaccaatgtttcgcagtacctcattaccaagaaactc
tctgccgtaagtcagaatattgcggtagtaggtgacgatgcccagtctatttatgccttc
cgtggtgctaatattgagaacatcctcaactttgagaaagactttccagaccttaaggtc
attaagctagagcagaattatcgctctactaaaaacattgttgaagcggccaactcactg
atcgctcaaaacaaagggcagcttaaaaagtctgtttggacagccaataatgatggcaac
cgaatagaactcatcaagtctatctcagacaatgaagaagggcgatttgtttcttcaacc
attttcgaacaaaaagcacaaaacaattacgaaaataaggacttcgctattctctataga
acgaacagccagtcgagggctatagaagaagcgcttagaaaaagcggtattccttacaaa
atctatggtggtctttccttctatcaaagaaaggaaatcaaagacctgatgggctatttg
aggttcgccatcaataccaacgatgagcaatctttcagaagaatcatcaacctaccgaaa
cgaggcattggacctacctcggttgaaaaaatggtggttgcggcttttgagcatgacatt
ccgctctgggaagtgctgaccaacatagacatgttccttccgggaagagccgccaatgcc
gttagagactttgttaccttggttaaaagtttcaaaatctatgtagactctaaagatgct
tttgaagcggcaagtcatatagccaaagcttcgggcttgcttaaagagctttacgatgac
aaaacggttgaaggacttaaccgctacgaaaacgttcaggaactcctgaatgccatgaag
gagttcgtagaaacgcctgaagtagaagacaaaaccttgggcgcatttcttcaagacatt
gctctattgacggatgcagacaatgaagaccctacagacaatgacttcgtttctttaatg
acaattcatgcatcgaagggactagagtttaaaaacgtattcatcgttggtttggaagaa
gacctcttcccttctcaaatgatgttgagcagtagagccgacttagaagaagaacgcagg
cttttttatgtggccattacgcgggctcaagacaacctgtacttttcttatgccctttcg
cgttacaggtttggtaggctcattaattgtgaaccaagccgttttattgaagaagtagac
cccaattatatctttgtgaacacacgctttggaagcagagaacctaagttgggtaagagc
gaacagccaccgggtttttcttcaagctttgcaagaaacttgatgagcaataaaaaacca
gtagccaaaaagccgcttcaataccataaaccttcggtagattttaagcctagcgacaca
tcgaagcttggagaaggcatgaaggtagaacatccgaaattcggcttcggaaaagtacga
aaactagacaccgaaggcgccaacaaaaaggcaatagtcatatttgaagactttggcgaa
aaaacgctcttgctggcctttgcaaagcttagaatagtagaatag
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