Roseivirga spongicola: T7867_15020
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Entry
T7867_15020 CDS
T09626
Name
(GenBank) RNA polymerase sigma factor RpoD/SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
rsr
Roseivirga spongicola
Pathway
rsr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rsr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
T7867_15020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsr03021
]
T7867_15020
Transcription machinery [BR:
rsr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
T7867_15020
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
UPF0122
HTH_28
Motif
Other DBs
NCBI-ProteinID:
WPZ09574
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Position
3347495..3348358
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AA seq
287 aa
AA seq
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MRQLKISKQITNRESQSLDKYLQEIGKVDLLTPDEEVTLAQRIREGDQLALEKLTKANLR
FVVSVAKQYQNQGLSLGDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNRVGSLNKISKTFSELEQKFEREPSPDELAEVLEVTTNEVVDTMKISGRHV
SMDAPFVQGEENSLLDVLENDSEEKPDTGLMNDSLRREVQRALSTLTQREADVITLYFGL
NGEHSMTLEEIGEKFNLTRERVRQIKEKAIRRLRHTSRSKALKPYLG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgagacagcttaagattagtaagcagattactaacagagagtcacaatctctggataaa
tatttacaggaaatcggtaaggtagacctactgactccagacgaggaagtaacacttgct
caaaggattcgcgaaggagatcagctggcattggaaaagttaaccaaggccaacttgaga
ttcgttgtgtcggtagcgaaacaatatcaaaatcagggtttatctctgggtgatttgatc
aacgaaggaaaccttggtttgattaaagccgctcagcgtttcgatgaaactcgtggtttt
aaattcatctcatatgctgtatggtggattagacaatctatccttcaagctttggctgag
caatctagaattgttcgtttgccattgaacagagttggttcattgaataaaatttcaaag
accttctctgaacttgagcagaagtttgagcgtgagccttcaccagacgaattagcagaa
gtattggaagtgactaccaacgaggtggttgataccatgaaaatttcaggtagacacgtt
tcaatggatgcgccattcgttcagggtgaagagaatagcttacttgatgtattagaaaac
gactcagaagaaaaaccagatactggtcttatgaatgactctttgagaagagaagttcag
cgagcgctttctactttaactcaaagagaggccgatgttattacactttactttggtttg
aacggtgaacattcaatgactctagaagaaattggagagaaattcaacctaaccagagag
cgtgtaagacaaattaaagagaaggcaatcaggaggttacgtcatacatcgagaagtaaa
gccttgaaaccgtatcttggataa
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