Rummeliibacillus stabekisii: ATY39_03255
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Entry
ATY39_03255 CDS
T04369
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rst
Rummeliibacillus stabekisii
Pathway
rst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATY39_03255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rst03019
]
ATY39_03255
Messenger RNA biogenesis [BR:
rst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ATY39_03255
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AMW98542
UniProt:
A0A143HA00
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Position
693687..695360
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AA seq
557 aa
AA seq
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MAKTITKNEVIRVIPLGGVCEVGKAMYVIEIDEEIFVVDSGLMFPEDEMLGIDYVIPDIS
YLVENKSRVKGIFLTHGHEDAIGSVAYLLQKVNAPVYGSKLTIALAKEHLKELPAPYQIK
FFEVTSKSRMNFQTTYVTFFHTTHSIPDSLGIAFHTSEGAIVHTGEFKFDQSAKGKYKPD
LAKMANLGEEGVFILMSDSTEAERPGYTIPENVVQEKLAKTFHNAEGRILVALYASNFIR
IQQVFDQATDADRKIAVIGKSLEHAFEVGMRLGYLSVDPDRIIPANKMNDYADEEIVAII
TGNQGEPLEGLEKIIRKHHRDIRIKNTDTVLITFTPSPGMEVQIADTMNSLAKAGAKVLS
ADKKVHVSGHGSQEDLKLMLNLMRPKYFIPIQGDYRMLIAHSKLAQQTGMSKAQIFIADK
GDIVEYKGGKMRMSGRVTAGNVLIDGIGVGDVGNIVLRDRKLLSQDGIFIVVVTINRKEK
KVASGPEILSRGFVYVRESEELLSESSELVRAVVESYVNKGSYEWTSIKQEIRDTLNSYL
FQKTKRRPMIIPIIMEY
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaacaataacaaaaaatgaagtaatacgcgtcatccctttgggcggcgtgtgt
gaagtcggcaaagcaatgtacgttatcgaaattgatgaagaaatctttgtcgtggatagc
ggccttatgtttccggaagacgaaatgttaggcattgattatgtcataccagacatatct
tacttagtcgaaaataaatcacgtgtaaaaggtattttcttaacacatggacatgaagat
gccattggatctgtcgcatatttactacaaaaagtgaacgcgccggtttatggatctaaa
ttgacgatcgcattagcgaaagaacatttgaaagaattgcctgcaccatatcaaattaag
ttttttgaagtaacgagcaagagtcgcatgaacttccaaacgacttatgtgacattcttc
catactacacacagtatcccagattcattgggtattgctttccatacaagtgaaggtgct
attgtccatacaggcgaatttaagtttgaccaatcagcaaaaggtaaatataagccagat
cttgcaaaaatggcaaacttgggtgaagaaggcgtctttatcttgatgtctgattctact
gaagcagaacgtcctggctatacaattcccgaaaatgttgtacaggagaaattagcaaaa
acttttcataatgcagaaggccgcattttagttgcgctatatgcttctaattttatccgt
atccagcaagtatttgatcaagcaactgatgctgatcgaaaaatcgctgttataggtaaa
agcttagagcatgcatttgaagttggtatgcgtctgggttacttatctgttgatcctgac
agaattatcccagcaaataaaatgaatgattatgcagatgaagaaattgtggcgattata
acaggaaatcaaggtgaaccactagaaggattagaaaaaattatccgcaaacaccaccgc
gatatccgtattaaaaatacagacacagttcttattactttcacaccttcaccagggatg
gaagtccaaatcgcagacacaatgaacagccttgcaaaagcaggagcaaaagtattgtct
gctgataaaaaagtgcatgtttcagggcacggctcgcaagaagatttgaaattaatgctg
aatttaatgcgaccaaaatactttatcccaattcaaggcgactaccgtatgttaatagct
cactcaaagttggcgcaacaaacaggtatgtctaaagcccaaatttttattgctgataaa
ggagatatcgtagaatataaaggcggcaaaatgcgtatgagtggccgtgtcactgctgga
aacgtgctaattgacggtataggcgtaggcgatgtaggcaatattgtattacgcgatcgt
aaattgcttagtcaagatggtatattcattgtagttgtgaccatcaaccgcaaagagaaa
aaagttgcttctggtccagaaattttatcaagaggctttgtatatgtaagagaatcagaa
gaattattaagtgagtcttctgaattagttcgcgctgttgtcgaaagttatgtgaataaa
ggctcgtacgaatggacaagtataaaacaagaaatccgtgacacgctaaactcttattta
ttccaaaaaaccaaaagaagaccaatgattatccctattattatggaatattag
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