Rummeliibacillus stabekisii: ATY39_12610
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Entry
ATY39_12610 CDS
T04369
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rst
Rummeliibacillus stabekisii
Pathway
rst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATY39_12610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rst03019
]
ATY39_12610
03009 Ribosome biogenesis [BR:
rst03009
]
ATY39_12610
Enzymes [BR:
rst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATY39_12610
Messenger RNA biogenesis [BR:
rst03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATY39_12610
Ribosome biogenesis [BR:
rst03009
]
Prokaryotic type
rRNA helicases
ATY39_12610
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
CMS1
GRP
DD_DDX21-DDX50
NAT10_TcmA_helicase
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AMX00176
UniProt:
A0A143HFB9
LinkDB
All DBs
Position
complement(2535429..2536958)
Genome browser
AA seq
509 aa
AA seq
DB search
MTNFSELNISASTQRSLKRMGFEEATPIQEGTISYALEGRDIIGQAQTGTGKTAAFGIPL
IEKVDPKNPVVQALIIAPTRELAIQSSEELYKIGYDKRARILSVYGGQDISRQIRALKNK
PQIIVGTPGRILDHIKRRTLKLENVETLVLDEADEMLNMGFIEDINTILENVPSERQTLL
FSATMPAPIRKIAETFMKDPEIVKIKSKEMTVENIEQYFVKAQEREKFDVLSRLLNVHQP
ELAIVFGRTKRRVDELAHALNIRGYLAEGIHGDLSQAKRLSVLRQFKENKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTK
KRMTPLKPPTADEALVGQQALAVEQLKELVEKNHLSDYRAMAEELLTTHDAVDLVAAALK
SLTKEPDDSPIKITEERPLPMRRTSSRGNSNGGGRSQGRGNYRGNRSGSSRGERGERSGS
GRRSDRSSSSRREGGRRDSGRRQPRRSED
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagcgcttctacacaaagatcccttaaacgtatg
ggatttgaagaagctacacccatccaagaaggtactatttcatacgccctagaaggacgc
gacattatcggtcaagcgcaaacaggtactggtaaaactgctgctttcgggattccgctt
attgaaaaagttgaccctaaaaatccagtcgtacaggctctaattattgccccaactcgc
gaactagcgattcaaagctcagaagaactttacaaaattggatatgacaaacgcgctcgc
attctttcagtatacggaggccaagatatcagccgccaaattcgcgcgcttaaaaataaa
cctcaaattattgtaggtacgcctggtcgtattcttgaccatatcaaacgccgtacgcta
aaactagaaaacgttgaaacacttgttttagacgaagcggatgaaatgttaaacatgggc
ttcattgaagatatcaacacaattttagaaaacgtgccatcagaacgccaaacattgttg
ttctctgcaacaatgccagcaccaattcgtaaaattgcggaaactttcatgaaggatcca
gaaatcgttaaaatcaaatcaaaagaaatgacagttgaaaatatcgaacaatacttcgtg
aaagcgcaagaacgcgaaaaattcgatgttttatctcgtcttttgaatgtacatcaaccg
gaattagctattgtctttggacgtactaaacgccgtgtagatgaactagcacatgcttta
aatattcgcggttacttagcagaaggcattcatggtgacttgagccaagcaaaacgtcta
tctgtactgcgccagtttaaagaaaacaaaattgacattcttgtagcaacagacgttgct
gctcgtggtttggatatctcaggcgtgacacatgtctacaactttgatattccacaagat
ccagaaagctatgttcaccgtattggccgtactggccgtgccggcaaatcaggccttgct
gttacatttgtgacaccacgcgaaatgggctacttgcgcatcgttgaagaaacaacgaaa
aaacgcatgacgccactaaaaccacctactgctgatgaagcgttggttggccaacaagca
cttgcagtggagcaattaaaagaactagtagagaaaaatcatctaagtgattatagagcg
atggcagaagaactgttgactacacatgatgcagttgatttagtagcagctgctttgaaa
tctctaacaaaagaacctgatgattcaccaatcaaaattactgaagaacgtccattacct
atgcgtcgcacatcttctcgcggcaatagtaatggtggcggtcgtagtcaaggccgtggc
aattaccgtggcaatagaagcggtagctctcgcggtgaacgcggagaacgcagcggcagc
ggtcgccgcagcgatcgtagtagcagtagccgtcgtgaaggtggccgccgtgatagcgga
cgtcgccaacctcgtcgtagcgaagactaa
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