Rummeliibacillus stabekisii: ATY39_15400
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Entry
ATY39_15400 CDS
T04369
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rst
Rummeliibacillus stabekisii
Pathway
rst03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATY39_15400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rst03400
]
ATY39_15400
Enzymes [BR:
rst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATY39_15400
DNA repair and recombination proteins [BR:
rst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ATY39_15400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
MFD_D3
IstB_IS21
UBA
Motif
Other DBs
NCBI-ProteinID:
AMX00679
UniProt:
A0A143HG18
LinkDB
All DBs
Position
3058963..3062484
Genome browser
AA seq
1173 aa
AA seq
DB search
MEILRHLLTSDPQVQKLLDEIKKGQGAELVTGLSGSARPAFLDTIFYTLQKPLYIISPNL
LQAQKMYDDLAKLIGEDMVHYYPADEFIAADMATSSPELRAARIETLDHMIHQQKGVYVI
PIAGMRKIMAPKEVWMNLNLTAKLGEEIDVEEWLNQLVTMGYSRSQMVTSPGEFALRGGI
LDIYPPYSENPVRIELFDTEVDSIRTFSADDQRSINKLKDIHLLPATEFVVTKNQRQQFA
QRLESALSESLKKVKKKEIQEQLYQNVQLDIELLQQGELPEFANRYGSLLYEKPAFLGDY
FAKDGLVVYDEYGRIQEVMEAWEKEEKEWFISLIEEGKMVHAVKPSYSMKEVSAMIQLPI
LYFSLFARNFSGVRFRDITSLSCKPMQHFHGQMPLLKGEIERWQREKFTVLFMAEDGSRL
PTIQTTLEDYDIHIQIGRPEVEGIFAITGNLSAGFELPMQRVAVVTEEELFKQKPKKKRN
RAQKMSNAERIKSYTEIKSGDYVVHVHHGIGKYVGIETLDVGGKHKDYLHIRYRADDKLY
VPVDQIDLIQKYIGSEDKEVKLHKLGGTEWGKTKTKVSRAVQDIADDLIKLYAKREAEKG
FAFSPDGDEQRAFEEAFQYEETEDQLRTIQEVKIDMEKERPMDRLVCGDVGYGKTEVAIR
AAFKAVLDGKQVAFLVPTTILAQQHYETLLERFQDYPVTIGVLNRFRSRKQQNETISGLK
AGTVDIVVGTHRLLSKDVVYKDLGLLVVDEEQRFGVTHKEKIKKLQTKVDVLTLTATPIP
RTLHMSMVGVRDLSVIETPPADRFPVQTYVMEHNGALVREAIERELARDGQVFYLHNRVE
DIAKKVEEIQMLVPDARVGSAHGRMTERDLENVILKFLEGEYDVLVTTTIIETGIDIPNV
NTLIINDADRMGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTEVAEQRLQAVKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLEEAITERQTGVKKEEEKDIEI
IIPFDAYIPDTYIPDGYQKIQMYKRIKSMDEEEDYSEIIDELQDRFGDFPVETERLLRIG
RMKVWAKQAGVESIKTKNKIITIEISEEGTAKLDGGKVVAESMVFGRAVGFQLEGQKLLL
TIDEKKAEAKSTFDILEALLKLLPTALREKTEA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggaaattttgcgtcatctattgactagcgatccgcaagtacaaaaattattagatgaa
ataaagaagggacagggagcagagctggtaacgggtctgtcgggcagcgcgcgtcccgca
tttttagatacaatattttatactctgcaaaagccgctttacataatttcgccaaacttg
ttgcaagcgcaaaaaatgtatgatgatttggctaaactgataggagaggacatggtccat
tactatccagctgacgaatttattgccgctgatatggccacatccagtccagagctcaga
gcagcacgtattgaaacattggatcatatgattcatcaacaaaaaggagtatatgttatt
cctatagctggtatgcgtaaaataatggctccgaaagaagtatggatgaatttaaattta
actgccaagcttggtgaagaaatcgacgtagaagaatggttgaaccaattagtgacaatg
gggtattcaagaagccaaatggtcacctctcctggtgaatttgcactgcgaggtggtatt
ttagacatttatcctccttattctgaaaatcctgttcgcatcgagttatttgatacagaa
gttgattccattcgcacattctcagcagatgaccaacgttctattaataaactaaaggat
atacatcttttgcctgcgacagaatttgttgtgacaaagaatcaaaggcagcaattcgcc
caaaggctggaaagtgcattaagtgagagcttaaaaaaggtaaagaaaaaagagatacaa
gaacaattatatcaaaatgttcaattggatatagaattgcttcagcaaggtgagttgccg
gagtttgctaatcgttacggatctctgttatatgaaaaacctgcattcttgggcgactat
tttgcgaaagatgggcttgttgtatatgacgagtacggaagaatccaagaagtaatggaa
gcttgggaaaaagaagagaaagagtggttcatttcccttatagaagaaggaaaaatggtg
catgcagtgaagccttcttattcaatgaaagaggtctcggctatgattcaattgccaata
ctttacttttcattgtttgccagaaatttttctggcgtacgtttccgagatatcactagc
ctttcttgcaagccgatgcagcattttcatggtcaaatgccgctgttaaaaggggaaatt
gagcgttggcagcgtgaaaaatttacagtactctttatggcggaagatggaagtcgtcta
ccaactatccagaccactttagaagattacgatattcatatacaaattggaaggcctgag
gtagaaggcatttttgcgattacgggtaatctttccgcaggttttgaactaccgatgcaa
cgtgtggcagtagtgacagaagaagagttgtttaaacaaaagcctaaaaagaaaagaaac
cgcgctcaaaaaatgtccaatgcagagcggattaaaagttatacagaaatcaagtctggc
gattacgtggtccatgtgcatcatgggatcggcaaatatgtaggaattgaaacgctagat
gtggggggcaaacataaggattatctccatatccgttatcgtgcagacgataaattgtat
gtgcctgtcgatcaaattgatttgattcaaaagtatattggttcggaagataaagaagtg
aaactccataagcttggaggtacagagtggggcaaaacgaaaacaaaagtatcgagagct
gtgcaagatatcgctgatgatctgatcaagctttatgctaagcgtgaagcagaaaaagga
tttgccttctctccagatggagatgagcaacgagcatttgaagaagcattccagtacgag
gaaacagaggatcaactacggacgattcaagaagtgaaaatagatatggaaaaagaaagg
ccaatggaccgcttagtatgtggagatgtgggttatggcaaaacagaagtggccatacgg
gctgcatttaaagctgtactagacggcaagcaagtagcctttttggtcccaactactatt
ttggctcagcagcattatgaaacgttgctagagagattccaagattaccctgttacaatc
ggcgtactgaaccgttttcgttctcgcaagcaacaaaatgaaactataagcggactgaaa
gctggtacggtagatatcgtagtaggcacacaccgccttttatcaaaagatgtcgtgtat
aaggatttaggtttattagttgtcgatgaagaacaacgattcggtgtaacacataaagag
aaaattaaaaaattacaaacaaaagtagatgtattaacattaacggcaacaccgattccc
cgcacattgcacatgtcgatggtcggagtacgcgatttatctgtaatcgagacaccacca
gctgaccgcttccctgttcaaacgtatgttatggaacataacggtgcacttgtgagagaa
gcgattgaacgcgaattagcacgtgatgggcaagtattctatctgcacaaccgtgtagaa
gatatagcgaaaaaggttgaagagattcaaatgcttgtgcctgatgcaagggtcggctct
gcccatggcagaatgactgaaagagatctagaaaacgtcattttaaaattccttgaaggt
gagtacgatgtattagtcacgaccaccatcattgagacaggtattgatattccaaatgtt
aacacattgattattaatgacgctgaccgtatggggctgtcgcagctgtatcaattaaga
gggcgtgtcggtaggtctagccgtgtggcgtatgcctatttcatgtatcaacgcgataaa
gtcttaactgaagtagcagaacaaaggctacaggcagtaaaagaatttacagagcttggt
tccggttttaaaattgcgatgcgcgatttatctatccgcggagcaggaaacttgcttggt
gcacaacagcatggctttattgattcagttggatttgatttgtattcacaaatgttagaa
gaagcgattacggagcggcaaacaggcgtgaaaaaggaagaagaaaaggatattgaaatc
attattccatttgatgcatatattccggatacttatattcctgatggctatcaaaaaatc
caaatgtataaacgcattaagagtatggatgaagaagaagactactctgagattattgat
gagctgcaagaccgattcggagatttcccagttgaaacggaacgcttgctgcgtattggc
cgtatgaaggtatgggcgaaacaagcaggagtagaatcaatcaaaacgaaaaataaaatc
atcacgattgaaatctcggaagaaggcactgccaagctagatggaggcaaagttgtagcc
gaatcaatggtatttggtcgggcagtaggcttccaattggaaggacaaaagttactttta
acgatagatgaaaagaaagcagaagcaaaatcaacgtttgacatattagaagctttgctg
aaattattaccaacagcactccgtgaaaagacggaggcatag
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