Rhodovulum sulfidophilum: NHU_01161
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Entry
NHU_01161 CDS
T04143
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rsu
Rhodovulum sulfidophilum
Pathway
rsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHU_01161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsu03019
]
NHU_01161
Enzymes [BR:
rsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NHU_01161
Messenger RNA biogenesis [BR:
rsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NHU_01161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_19
NAT10_TcmA_helicase
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BAQ68323
UniProt:
A0A0D6AZJ7
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All DBs
Position
1211312..1212517
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AA seq
401 aa
AA seq
DB search
MTFTELGLNARMVSRLGALGLTKPTPIQEKAIPQALQGHDILGIAQTGTGKTAAFGIPLI
VALSKQQERPAPHSARGLVLAPTRELAGQIVQSLQGMTADLRITLVVGGKSINVQAEKLA
RGTDILVATPGRLIDLMDRRAIDLGRTRFLVLDEADQMLDIGFIHALRRIAPKLSKDRQT
MMFSATMPKAMADLSRQYLDKPVRVEASAPGKVADKVSHSVHFVAKERKQDLLIELLRGH
RDDRALVFSRTKHGAERLMKHLEKAGFAATSIHGNKSQGQRDRAIAAFKAGSVRVLVATD
VAARGIDIPDVGHVYNYDLPNVPENYVHRIGRTARAGHSGRAIAFCAADEVAELRAIEKV
LGTRVEIAGGRPWEAMKAAPKSPQKRRTRQRSAGRSARLAA
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgacgttcaccgaactcgggctcaatgcccgcatggtctcgcggctcggcgcgctgggg
ctgaccaaaccgacccccattcaggaaaaggccatcccgcaggcgctgcagggccacgac
atcctggggatcgcccagaccgggaccggcaagaccgccgccttcggcatcccgctgatc
gtggcgctgtcgaaacagcaggagcgtcccgcgccgcattcggcccgcgggttggtgctt
gcgcccacgcgggaactggcgggccagatcgttcagagccttcagggcatgacggccgat
ctgcgcatcacgcttgtcgtcggcggcaagtcgatcaacgtgcaggcagagaagcttgcg
cgcggcaccgatatcctcgtcgcgacgccgggccggttgatcgacctgatggatcgccgg
gccatcgatcttggccggacacggtttctggttctcgacgaggccgaccagatgctcgat
atcggcttcatccatgcgctgcgccgcatcgcgccgaagctgagcaaggacaggcagacc
atgatgttctcggccacgatgccgaaggcgatggcggatctgtcccggcagtatctggac
aagcccgtccgtgtcgaggcctcggcgcccggcaaggtcgcggacaaggtcagccattcg
gtgcatttcgtcgccaaggagcggaagcaggatctgctgatcgaattgctgcgcgggcat
cgcgacgaccgggctctggtcttttcgcgcaccaagcatggtgccgaacggttgatgaag
catctcgagaaggccggtttcgcggcgacctcgatccacggcaacaagagccaggggcaa
cgggaccgggccattgcggccttcaaggcgggatcggtgcgtgtgctggtcgcgacggat
gttgcggcccgcgggatcgacatcccggatgtgggacatgtctacaattacgacctgccg
aacgtgcccgagaactacgtgcaccggatcgggcggacggcccgggccggccatagcggc
cgcgcgattgccttctgcgctgctgatgaagtggcggaactcagggccatcgagaaggtg
cttggcacccgtgtcgagattgccgggggccgtccctgggaggcgatgaaggctgcgccg
aaatctccgcagaaacgccggacgcgtcagcgctcggcgggccgttcggctcgactcgcc
gcgtga
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