Rhodovulum sulfidophilum: NHU_03231
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Entry
NHU_03231 CDS
T04143
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rsu
Rhodovulum sulfidophilum
Pathway
rsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHU_03231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsu03019
]
NHU_03231
Enzymes [BR:
rsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NHU_03231
Messenger RNA biogenesis [BR:
rsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NHU_03231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HEM4
Helicase_RecD
Flavi_DEAD
AAA_22
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
BAQ70372
UniProt:
A0A0D6B5J1
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All DBs
Position
3348204..3349454
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AA seq
416 aa
AA seq
DB search
MTTFDKMGLPKRLVTRLAETGITEPTPIQARAIPPALEGRDVIGLAQTGTGKTAAFGLPL
LTALAESRGKPTPKTARALVLAPTRELVKQIAESLRPLVAGTPVSVETVVGGASLSAQEK
RMARGADLLVATPGRLIDLMGRGAVVLAETRFLVLDEADQMLDMGFIHALRRIAAKLPKE
RQTMLFSATMPKQMDEIAASYLTNPVRVEVSPPGTAVDKITQSVHFLEKAEKTGRLIELL
DGHRDDRAIVFGRTKHGAERLSKQLERAGFATASIHGNKSQGQRDRAIKAFRAGDVRVLV
ATDVAARGIDIPEVRHVYNFDLPNVPDNYVHRIGRTARAGADGAAVAFCAPEEISELRAI
HKVMGCAIPVASGTPWEGLEPKQSRGGPRGAGKGAGKPPAKARARRRPRNKNRAAA
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
gtgacgacattcgacaagatgggcctgcccaagcggcttgtgacgcggctggccgagacc
ggcatcaccgagcccaccccgatccaggcccgcgccattcccccggcgctggaaggccgc
gacgtgatcgggctggcgcagaccggcaccggcaagaccgcggccttcggcctgccgctt
ctgaccgcgctggccgagagccgcggcaagcccacgcccaagaccgcccgcgccctggtg
ctggccccgacccgtgagctggtcaagcagatcgccgagagcctccggccgctggtcgcg
ggcacgccggtcagcgtcgagaccgtggtcggcggcgcctcgctttcggcgcaggaaaag
cggatggcgcgcggcgccgatctgctggtggcgacgcccgggcggctgatcgacctgatg
ggtcggggcgccgtggtgctggccgaaacccggttcctggtgctggacgaggccgaccag
atgctggacatgggcttcatccatgccctgcgccggatcgcggccaagctgccgaaggaa
cgccagaccatgctgttctcggccaccatgcccaagcagatggacgagatcgccgcaagc
tacctgaccaatccggtccgggtcgaggtgagcccccccggcaccgccgtcgacaagatc
acccaatcggtgcatttcctcgagaaggccgagaagaccggccgcctgatcgagcttctg
gacgggcatcgcgacgaccgtgccatcgtcttcggccgcaccaagcatggcgccgaacgg
ctgtcgaaacagcttgagcgggccggtttcgcgaccgcctcgatccatggcaacaagagc
cagggccagcgcgaccgcgcgatcaaggcgttccgcgcgggcgatgtgcgggtgctggtg
gcgaccgatgtggcggcgcggggcatcgacattcccgaggtccgccatgtctacaatttc
gacctgccgaacgtgcccgacaactatgtccaccggatcggccgcaccgcgcgggccggg
gccgatggcgcggcggtcgcgttctgcgcccccgaggagatctcggaactgcgggcgatc
cacaaggtgatgggctgcgcaatcccggttgcctcgggcacgccctgggaagggctcgag
ccgaagcagtcgcggggcggcccgcgcggcgcaggcaaaggcgcgggcaagccgcccgcc
aaggcccgggcacgccgtcgtccgcgcaacaagaaccgcgcggcggcctga
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