Rhodovulum sulfidophilum: NHU_03527
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Entry
NHU_03527 CDS
T04143
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rsu
Rhodovulum sulfidophilum
Pathway
rsu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rsu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NHU_03527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsu03021
]
NHU_03527
03400 DNA repair and recombination proteins [BR:
rsu03400
]
NHU_03527
Enzymes [BR:
rsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NHU_03527
Transcription machinery [BR:
rsu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NHU_03527
DNA repair and recombination proteins [BR:
rsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NHU_03527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
BAQ70660
UniProt:
A0A0D6B781
LinkDB
All DBs
Position
complement(3655927..3660171)
Genome browser
AA seq
1414 aa
AA seq
DB search
MNQELTTNPFNPLASPKQFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLSYGQMLTEEEYLDAQDQFGTDAFT
AGIGAEAIREMLAQIDLEAEAERLREELKEATGELKPKKIIKRLKVVESFVESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYITMERKGMKGEGMAFADVEEVQHAL
DAGEVHLHAKIIARIKQIDEHGNEVFQRFETTPGRVRLGALLPMNAKAPFELVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMGLGFREAFKAGISFGKDDMVIPERKWTIVEGVRQ
QVKEFEQQYMDGLITQGEKYNKVVDAWSKCSDEVAAAMMSEISAVRVDDAGAEMEPNSVY
MMAHSGARGSPAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVRSHDCGTENAITCEAAINDGEVVATLAERLLGRV
AADDVLKPGTDEVLVTRNELIDERKADAIEKAGVATVRIRSPLTCEAEEGVCAACYGRDL
ARGTKVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFQETSQEGRIEFRNAN
LLTNAAGDQIVMGRNMQLAIIDDNDVERASFKLGYGTKVFVAEGARVARGDKLFEWDPYT
LPIIAEKAGRARLVDLVTGISVREDTDDATGMTQKIVSDWRTAPKGNELKPEIIIVDPET
GEPVRNEAGNPVTYPMSVDAILSVEDQQEIRAGDVVARIPREGAKTKDITGGLPRVAELF
EARRPKDHAIIAEIDGYVRFGRDYKNKRRITIEPADETIQPVEYMVPKGKHIPVQEGDFV
QKGDYIMDGNPAPHDILAIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKW
EISDSGDSTLLKGEHVDKAEFDEANDKVLARGGRPAEGQPILLGITKASLQTRSFISAAS
FQETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGASQRVRRIAAERDQKVIDARQ
AEAVSAAALAAPMEDFGTSDDDDLGLVETPESRE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccaccaacccgttcaacccgctggcgtcgcccaagcagttcgac
gagatcaaggtgtcgctggcctcgcccgaacggatcctttcgtggtcctatggcgagatc
aagaaacccgagaccatcaactaccggacgttcaagcccgagcgtgacggtctcttctgt
gcgcggatcttcgggccgatcaaggactacgagtgcctttgcggcaagtacaagcgcatg
aaatatcgcggcgtggtctgcgagaaatgcggcgtcgaggtgacgctgcagaaggtccgc
cgcgagcggatgggccatatcgagctggcggcgccggtcgcgcatatctggttcctcaag
tcgctgccgtcgcgcatcggcctgatgctggacatgacgctccgcgatctggaacgcgta
ctctatttcgagaactacgtggtgatcgagcccggtctgaccgatctgagctatggccag
atgctgaccgaggaagagtatctcgacgcgcaagaccagttcgggaccgatgccttcacc
gccgggatcggcgccgaggcgatccgcgagatgctggcgcagatcgatctcgaggccgag
gcagaacggctgcgcgaggagctgaaggaagccaccggcgagctgaagccgaagaagatc
atcaagcggctgaaggtcgtcgagagcttcgtcgaatccggcaaccgtccggaatggatg
gtgctgaccgtgatcccggtcatcccgccggaattgcggccgctggtgccgctcgatggc
ggccggttcgccacgtcggacctgaacgacctctaccgccgggtgatcaaccggaacaac
cgtctgaagcggctgatcgagctgcgcgcgcccgacatcatcgtccgcaacgaaaagcgg
atgctgcaggaatcggtcgatgcgctgttcgacaatggtcgccgcggccgcgtcataacc
ggcgccaacaagcggccgctgaaatcgctcagcgacatgctcaagggcaagcagggccgg
ttccgccagaaccttctgggcaaacgggtcgacttctcgggccgttcggtgatcgtgacc
ggccccgagctcaagctgcaccagtgcgggctgccgaagaagatggcgctcgagctgttc
aagccgttcatctattcgcggcttgaagccaaggggctttcctcgaccgtcaagcaggcc
aagaagctggtcgagaaggaacgtcccgaggtctgggacatcctcgacgaggtgatccgc
gaacacccggtgatgctgaaccgggcgccgacgctgcaccgtctgggcatccaggcgttc
gagccgacgctgatcgaaggcaaggcgatccagctgcacccgctggtctgctcggccttc
aacgccgacttcgacggcgaccagatggccgtgcacgttccgctgagcctcgaggcccag
ctggaagcgcgggtcctgatgatgtcgaccaacaacgtgctgtcgcccgccaacggcgcg
ccgatcatcgtgccgtcgcaggacatgatcctcgggctctattacatcacgatggagcgc
aagggcatgaagggcgagggcatggcctttgccgatgtcgaagaggtgcagcacgcgctc
gacgcgggcgaggtgcatctgcatgccaagatcatcgcgcggatcaagcagatcgacgag
catggaaacgaggtgttccagcgcttcgagaccacgccgggtcgggtccggctgggcgcg
ctcctgccgatgaatgccaaggcgccgttcgaactggtcaaccggctgctgcgcaagaaa
gaggtgcagcaggtcatcgacaccgtttaccgctattgcggccagaaggagtcggtcatc
ttctgtgaccagatcatggggctcgggttccgcgaggcgttcaaggccgggatctccttc
ggcaaggacgacatggtcattcccgagcggaaatggacgatcgtcgagggcgtgcgccag
caggtcaaggaattcgaacagcagtacatggacggcctgatcactcagggcgaaaagtac
aacaaggttgtcgatgcctggtcgaaatgctcggacgaggtcgccgccgcaatgatgtcc
gagatctcggccgtccgcgtcgacgatgccggggccgagatggagccgaactcggtctac
atgatggcccactcgggcgcccggggctcgccggctcagatgaagcagctgggcggcatg
cgcggcctgatggccaagccctcgggcgagatcatcgagaccccgatcatctcgaacttc
aaggaaggtctgaccgtgctcgagtacttcaactcgacccacggtgcccggaagggtctg
gccgataccgcgctgaagacggcgaactcggggtacctcacccggcgtctggtggacgtc
gctcaggactgcatcgtgcgcagccacgattgcggcaccgagaacgccatcacctgcgaa
gcggcgatcaacgacggcgaggtcgtggcgaccctggcggaacggctgcttggccgtgtc
gcggccgatgacgtgctgaaacccggcaccgacgaggttctggtcacccgcaacgagctg
atcgacgaacgcaaggcggatgcgatcgagaaggccggtgtcgccaccgtccggatccgg
tcgccgttgacctgcgaggcagaagagggcgtctgcgcggcctgctacggccgtgacctg
gcgcgcggcaccaaggtgaatatcggcgaggctgtcggcatcatcgccgcgcagtcgatc
ggcgagcccggcacgcagctgacgatgcggaccttccacatcggcggtatcgcccagggg
ggccagcagtccttccaggagaccagccaggagggccggatcgagttccgcaacgccaac
ctgctgaccaatgcggcgggtgaccagatcgtcatgggccggaacatgcagctggccatc
atcgacgataacgatgtcgagcgggcgagcttcaagctgggctatggtaccaaggtcttc
gtggccgagggagcccgggtggcacggggcgacaagctgttcgaatgggacccctacacc
ctgccgatcatcgccgagaaggcgggtcgcgccaggctcgtggacctcgtgaccgggatc
tcggtccgcgaggataccgacgatgccaccggcatgacccagaagatcgtgtccgactgg
cgtaccgcgcccaagggcaacgagctgaagcccgagatcatcatcgtcgatcccgaaacc
ggcgagccggtccgcaacgaagcgggcaacccggtcacctatccgatgtcggtggatgcg
atcctctcggtcgaggatcagcaggaaatccgggccggtgacgtggtggcacggatcccg
cgcgaaggtgccaagaccaaggacatcaccggcggtctgccgcgggtggcggaactgttc
gaggcccggcgtccgaaggatcacgcgatcatcgccgaaatcgacggctatgtccggttc
ggccgcgactacaagaacaagcggcggatcaccatcgagccggcggacgagaccatccag
ccggtcgaatacatggtgcccaagggcaagcacatcccggtgcaggaaggcgacttcgtg
cagaagggcgactacatcatggacggcaacccggcgccgcatgacatcctcgccatcatg
ggtgtcgaggcgctggcgaactacatgatcgacgaggtgcaggacgtctaccggctgcag
ggcgtgaagatcaacgacaagcatatcgaggtgatcgtccggcagatgctgcagaaatgg
gagatctcggattcgggtgactccacgcttctgaagggcgagcatgtcgacaaggccgag
ttcgacgaggccaatgacaaggtgctggcgcgcggcgggcgtcccgcagagggtcagccg
atcctgctggggatcaccaaggcctcgctgcagacccggtccttcatctcggcggcttcg
ttccaggagacgacgcgggtgctgaccgaggcctcggtccagggcaagcgcgacaagctg
gtcggcctgaaggaaaacgtcattgtcggccggttgatcccggcgggcaccggcggggcc
agccagcgcgtgcgccgcatcgcggccgagcgcgaccagaaggtcatcgacgcccgtcag
gccgaggcggtctcggccgcggctttggcggctccgatggaagacttcggcacgtccgac
gatgacgatctggggctggtggaaacgcccgaaagccgcgaataa
DBGET
integrated database retrieval system
